Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

881 of 7,064 resources

Showing 651–700

> [!IMPORTANT] > 🎉 Check out the latest version of Phikon here: Phikon-v2 > > Phikon is a self-supervised learning model for histopathology trained with iBOT.

Idle19.8K1 year ago
Python

# Model details ## Model description Nature Language Model (NatureLM) is a sequence-based science foundation model designed for scientific discovery. Pre-trained with data from multiple scientific domains, NatureLM offers a unified, versatile model that enables various applications including…

Idle941 year ago

# Model details ## Model description Nature Language Model (NatureLM) is a sequence-based science foundation model designed for scientific discovery. Pre-trained with data from multiple scientific domains, NatureLM offers a unified, versatile model that enables various applications including…

Idle2611 year ago

An Evolutionary-scale Model (ESM) for protein function prediction from amino acid sequences using the Gene Ontology (GO). Based on the ESM2 Transformer architecture, pre-trained on UniRef50, and fine-tuned on the AmiGO dataset, this model predicts the GO subgraph for a particular protein sequence -…

Idle531 year ago
Python

Model documentation: MedGemma

Idle141 year ago
Python

An Evolutionary-scale Model (ESM) for protein function prediction from amino acid sequences using the Gene Ontology (GO). Based on the ESM2 Transformer architecture, pre-trained on UniRef50, and fine-tuned on the AmiGO dataset, this model predicts the GO subgraph for a particular protein sequence -…

Idle321 year ago
Python

An Evolutionary-scale Model (ESM) for protein function prediction from amino acid sequences using the Gene Ontology (GO). Based on the ESM2 Transformer architecture, pre-trained on UniRef50, and fine-tuned on the AmiGO dataset, this model predicts the GO subgraph for a particular protein sequence -…

Idle291 year ago
Python

This model mlx-community/medgemma-27b-text-it-bf16 was converted to MLX format from google/medgemma-27b-text-it using mlx-lm version 0.25.1.

Idle4471 year ago
Python

An Evolutionary-scale Model (ESM) for protein function prediction from amino acid sequences using the Gene Ontology (GO). Based on the ESM2 Transformer architecture, pre-trained on UniRef50, and fine-tuned on the AmiGO dataset, this model predicts the GO subgraph for a particular protein sequence -…

Idle291 year ago
Python

An Evolutionary-scale Model (ESM) for protein function prediction from amino acid sequences using the Gene Ontology (GO). Based on the ESM2 Transformer architecture, pre-trained on UniRef50, and fine-tuned on the AmiGO dataset, this model predicts the GO subgraph for a particular protein sequence -…

Idle481 year ago
Python

This model had been created as part of joint research of HUMADEX research group (https://www.linkedin.com/company/101563689/) and has received funding by the European Union Horizon Europe Research and Innovation Program project SMILE (grant number 101080923) and Marie Skłodowska-Curie Actions…

Idle1.8K1 year ago

This model had been created as part of joint research of HUMADEX research group (https://www.linkedin.com/company/101563689/) and has received funding by the European Union Horizon Europe Research and Innovation Program project SMILE (grant number 101080923) and Marie Skłodowska-Curie Actions…

Idle3011 year ago

This model had been created as part of joint research of HUMADEX research group (https://www.linkedin.com/company/101563689/) and has received funding by the European Union Horizon Europe Research and Innovation Program project SMILE (grant number 101080923) and Marie Skłodowska-Curie Actions…

Idle621 year ago

An Evolutionary-scale Model (ESM) for protein function prediction from amino acid sequences using the Gene Ontology (GO). Based on the ESM2 Transformer architecture, pre-trained on UniRef50, and fine-tuned on the AmiGO dataset, this model predicts the GO subgraph for a particular protein sequence -…

Idle321 year ago
Python

CineMA is a foundation model for Cine cardiac magnetic resonance (CMR) imaging based on Masked-Autoencoder. CineMA has been pre-trained on UK Biobank data and fine-tuned on multiple clinically relevant tasks such as ventricle and myocaridum segmentation, ejection fraction (EF) regression,…

Idle01 year ago

FloraSense is a fine-tuned Vision Transformer (ViT) model designed for accurate classification of plant species and flora-related imagery. It builds on top of the powerful google/vit-base-patch16-224 base model and is fine-tuned on the PlanterGARDENEDITION dataset curated by Sisigoks, which…

Idle2481 year ago
Python

FineMedLM-o1

Idle151 year ago
Python
Idle01 year ago

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Idle37.5K1 year ago
Python

Using llama.cpp release b5466 for quantization.

Idle1.6K1 year ago

Using llama.cpp release b5466 for quantization.

Idle4.3K1 year ago

Dans-PersonalityEngine-V1.3.0-24b Dans-PersonalityEngine-V1.3.0-24b ⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⢀⠀⠄⠀⡂⠀⠁⡄⢀⠁⢀⣈⡄⠌⠐⠠⠤⠄⡀⠀⠀⠀⠀⠀⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠀⠀⠀⡄⠆⠀⢠⠀⠛⣸⣄⣶⣾⡷⡾⠘⠃⢀⠀⣴⠀⡄⠰⢆⣠⠘⠰⠀⡀⠀⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠀⠀⠀⠀⠃⠀⡋⢀⣤⡿⠟⠋⠁⠀⡠⠤⢇⠋⠀⠈⠃⢀⠀⠈⡡⠤⠀⠀⠁⢄⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠁⡂⠀⠀⣀⣔⣧⠟⠋⠀⢀⡄⠀⠪⣀⡂⢁⠛⢆⠀⠀⠀⢎⢀⠄⢡⠢⠛⠠⡀⠀⠄⠀⠀ ⠀⠀⡀⠡⢑⠌⠈⣧⣮⢾⢏⠁⠀⠀⡀⠠⠦⠈⠀⠞⠑⠁⠀⠀⢧⡄⠈⡜⠷⠒⢸⡇⠐⠇⠿⠈⣖⠂⠀…

Idle1.5K1 year ago
Python

Dans-PersonalityEngine-V1.3.0-12b Dans-PersonalityEngine-V1.3.0-12b ⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⢀⠀⠄⠀⡂⠀⠁⡄⢀⠁⢀⣈⡄⠌⠐⠠⠤⠄⡀⠀⠀⠀⠀⠀⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠀⠀⠀⡄⠆⠀⢠⠀⠛⣸⣄⣶⣾⡷⡾⠘⠃⢀⠀⣴⠀⡄⠰⢆⣠⠘⠰⠀⡀⠀⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠀⠀⠀⠀⠃⠀⡋⢀⣤⡿⠟⠋⠁⠀⡠⠤⢇⠋⠀⠈⠃⢀⠀⠈⡡⠤⠀⠀⠁⢄⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠁⡂⠀⠀⣀⣔⣧⠟⠋⠀⢀⡄⠀⠪⣀⡂⢁⠛⢆⠀⠀⠀⢎⢀⠄⢡⠢⠛⠠⡀⠀⠄⠀⠀ ⠀⠀⡀⠡⢑⠌⠈⣧⣮⢾⢏⠁⠀⠀⡀⠠⠦⠈⠀⠞⠑⠁⠀⠀⢧⡄⠈⡜⠷⠒⢸⡇⠐⠇⠿⠈⣖⠂⠀…

Idle1011 year ago
Python

Dans-PersonalityEngine-V1.1.0-12b This model series is intended to be multifarious in its capabilities and should be quite capable at both co-writing and roleplay as well as find itself quite at home performing sentiment analysis or summarization as part of a pipeline.

Idle241 year ago
Python

Dans-PersonalityEngine-V1.2.0-24b ⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⢀⠀⠄⠀⡂⠀⠁⡄⢀⠁⢀⣈⡄⠌⠐⠠⠤⠄⡀⠀⠀⠀⠀⠀⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠀⠀⠀⡄⠆⠀⢠⠀⠛⣸⣄⣶⣾⡷⡾⠘⠃⢀⠀⣴⠀⡄⠰⢆⣠⠘⠰⠀⡀⠀⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠀⠀⠀⠀⠃⠀⡋⢀⣤⡿⠟⠋⠁⠀⡠⠤⢇⠋⠀⠈⠃⢀⠀⠈⡡⠤⠀⠀⠁⢄⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠁⡂⠀⠀⣀⣔⣧⠟⠋⠀⢀⡄⠀⠪⣀⡂⢁⠛⢆⠀⠀⠀⢎⢀⠄⢡⠢⠛⠠⡀⠀⠄⠀⠀ ⠀⠀⡀⠡⢑⠌⠈⣧⣮⢾⢏⠁⠀⠀⡀⠠⠦⠈⠀⠞⠑⠁⠀⠀⢧⡄⠈⡜⠷⠒⢸⡇⠐⠇⠿⠈⣖⠂⠀ ⠀⢌⠀⠤⠀⢠⣞⣾⡗⠁⠀⠈⠁⢨⡼⠀⠀⠀⢀⠀⣀⡤⣄⠄⠈⢻⡇⠀⠐⣠⠜⠑⠁⠀⣀⡔⡿⠨⡄…

Idle761 year ago
Python

# fernandoruiz/medgemma-4b-it-Q4_0-GGUF This model was converted to GGUF format from google/medgemma-4b-it using llama.cpp via the ggml.ai's GGUF-my-repo space. Refer to the original model card for more details on the model.

Idle371 year ago
Python

Unsloth Dynamic 2.0 achieves superior accuracy & outperforms other leading quants.

Idle5.7K1 year ago
Python

Unsloth Dynamic 2.0 achieves superior accuracy & outperforms other leading quants.

Idle1.2K1 year ago
Python

This repository contains a fine-tuned Vision Transformer (ViT) model trained on a large collection of MRI scans for brain tumor classification. The model classifies MRI images into one of three categories:

Idle131 year ago

# Mol-Llama-3.1-8B-Instruct [Project Page] [Paper] [GitHub]

Idle1491 year ago
Python

This model has been pushed to the Hub using the PytorchModelHubMixin integration: - Hugging Face Space (available now): https://huggingface.co/spaces/Tournesol-Saturday/railNet-tooth-segmentation-in-CBCT-image - Code: https://github.com/Tournesol-Saturday/RAIL - Paper: RAIL: Region-Aware…

Idle451 year ago

Pytorch Implementation of the paper: "MCP-MedSAM: A Powerful Lightweight Medical Segment Anything Model Trained with a Single GPU in Just One Day"

Idle01 year ago

This project introduces a text-to-image diffusion model fine-tuned using LoRA (Low-Rank Adaptation) on top of CompVis/stable-diffusion-v1-4 for the task of medical image generation. The model generates X-ray, CT, or MRI scans based on natural language descriptions of patient symptoms, offering a…

Idle321 year ago
Python

🚀 Meerkat-8B is a new instruction-tuned medical AI system of the Meerkat model family. The model was based on the Meta's Llama-3-8B-Instruct model and fine-tuned using our new synthetic dataset consisting of high-quality chain-of-thought reasoning paths sourced from 18 medical textbooks, along…

Idle4261 year ago
Python

🚀 Meerkat-7B-v1.0 is an instruction-tuned medical AI system that surpasses the passing threshold of 60% for the United States Medical Licensing Examination (USMLE) for the first time among all 7B-parameter models. The model was trained using our new synthetic dataset consisting of high-quality…

Idle921 year ago
Python

This is https://huggingface.co/kingabzpro/Qwen-3-32B-Medical-Reasoning applied to https://huggingface.co/Qwen/Qwen3-32B Original model card created by @kingabzpro

Idle3421 year ago
Python

GP-MoLFormer is a class of models pretrained on SMILES string representations of 0.65-1.1B molecules from ZINC and PubChem. This repository is for the model pretrained on all the unique molecules from both datasets.

Idle1.5K1 year ago
Python

Model Repo: xformai/qwen-0.6b-mentalhealth-support Base Model: Qwen/Qwen-0.5B Task: Empathetic Conversational AI for mental health & emotional support Fine-Tuned By: XformAI

Idle71 year ago

### Note: This model is copied version of DNABERT-2 which removes the FlashAttention integration with Trition. This allows the model to be installed off HuggingFace without having to uninstall Triton. Running the below example code yields identical output compared to the original verison.

Idle1.2K1 year ago

## Model Description EYE-Llama_gqa is a large language model specifically designed for ophthalmic question-answering (QA). It is built upon the Llama 2 architecture and fine-tuned on a the EYE-lit and EYE-QA+ dataset.

Idle1651 year ago
Python

## Overview This project focuses on curating and modeling bioactivity data of small molecules targeting immune receptors. Using datasets from ImmtorLig_DB, we applied machine learning techniques to predict interactions between small molecules and immune receptors or cytokines, aiding drug discovery…

Idle01 year ago

本模型基于 trueto/medbert-base-chinese 预训练模型,结合 BiLSTM 和 CRF 构建而成,用于中文医疗命名实体识别(NER)任务。

Idle101 year ago

Model Size: 7B

Idle201 year ago

Model Size: 8B (English)

Idle561 year ago
Idle281 year ago

This model card describes the ClinicalBERT model, which was trained on a large multicenter dataset with a large corpus of 1.2B words of diverse diseases we constructed. We then utilized a large-scale corpus of EHRs from over 3 million patient records to fine tune the base language model.

Idle16K1 year ago
Python

This is the full precision (f16) GGUF version of a model trained for medical chatbot and dental implant assistant tasks. It combines general doctor–patient dialogue understanding with domain-specific Q&A derived from Straumann® dental implant system manuals.

Idle191 year ago

This project fine-tunes the meta-llama/Llama-4-Scout-17B-16E-Instruct model using a medical reasoning dataset (FreedomIntelligence/medical-o1-reasoning-SFT) with 4-bit quantization for memory-efficient training.

Idle01 year ago
Python