Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

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## Model Overview AgroNT is a DNA language model trained on primarily edible plant genomes. More specifically, AgroNT uses the transformer architecture with self-attention and a masked language modeling objective to leverage highly available genotype data from 48 different plant speices to learn…

Stale4.2K2 years ago
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If you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.

Stale3362 years ago
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# Medical-Llama3-v2 Fine-Tuned Llama3 for Medical Q&A This repository provides a fine-tuned version of the powerful Llama3 8B model, specifically designed to answer medical questions in an informative way. It leverages the rich knowledge contained in the AI Medical Chatbot dataset…

Stale332 years ago
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This is an official model checkpoint for Asclepius-Mistral-7B-v0.3 (arxiv). This model is an enhanced version of Asclepius-7B, by replacing the base model with Mistral-7B-v0.3 and increasing the max sequence length to 8192.

Stale2462 years ago
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This is an official model checkpoint for Asclepius-Llama3-8B (arxiv). This model is an enhanced version of Asclepius-7B, by replacing the base model with Llama-3 and increasing the max sequence length to 8192.

Stale852 years ago
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If you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.

Stale4442 years ago
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# MMedLM 💻Github Repo 🖨️arXiv Paper

Stale3292 years ago
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This model is deprecated. please use the updated sentence transformer model here: https://huggingface.co/nasa-impact/nasa-smd-ibm-st-v2. Alternatively, you can also use distilled version of the model here: https://huggingface.co/nasa-impact/nasa-ibm-st.38m

Stale142 years ago
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# JSL-MedLlama-3-8B-v2.0

Stale5962 years ago
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Reference: R. Luu and M.J. Buehler, "BioinspiredLLM: Conversational Large Language Model for the Mechanics of Biological and Bio-Inspired Materials," Adv. Science, 2023, DOI: https://doi.org/10.1002/advs.202306724

Stale612 years ago
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Medical mT5: An Open-Source Multilingual Text-to-Text LLM for the Medical Domain

Stale382 years ago
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# ChemLLM-7B-Chat-1.5-DPO: LLM for Chemistry and Molecule Science ChemLLM-7B-Chat-1.5-DPO, The First Open-source Large Language Model for Chemistry and Molecule Science, Build based on InternLM-2 with ❤

Stale4182 years ago
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This model is a fine-tuned version of DeBERTa on the PubMED Dataset.

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Using llama.cpp release b2440 for quantization.

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!image/png

Stale3752 years ago
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Using llama.cpp commit fa97464 for quantization.

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!image/png

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# Mr-Grammatology-clinical-problems-Mistral-7B-0.5 !image/png

Stale552 years ago
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Abstract:

Stale96K2 years ago
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This is a merge of pre-trained language models created using mergekit.

Stale7942 years ago
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Abstract:

Stale8752 years ago
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This is a merge of pre-trained language models created using mergekit.

Stale4212 years ago
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This is a merge of pre-trained language models created using mergekit.

Stale3K2 years ago
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This modelcard aims to be a base template for new models. It has been generated using this raw template.

Stale02 years ago

SMILES2IUPAC-canonical-base was designed to accurately translate SMILES chemical names to IUPAC standards.

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### Model Description A machine learning model for waste classification

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# TinyLlama-1.1B

Stale1192 years ago
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The T5 Large for Medical Text Summarization is a specialized variant of the T5 transformer model, fine-tuned for the task of summarizing medical text. This model is designed to generate concise and coherent summaries of medical documents, research papers, clinical notes, and other…

Stale2.2K2 years ago
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This is official model checkpoint for Asclepius-13B (arxiv). This model is the first publicly shareable clinical LLM, trained with synthetic data.

Stale582 years ago
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Details coming soon

Stale2912 years ago
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# Meditron 70B - GGUF - Model creator: EPFL LLM Team - Original model: Meditron 70B

Stale7962 years ago
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A Vision Transformer (ViT) image classification model. \ Trained on 15M histology patches from PAIP and TCGA. \ Used the MoCo v3 self supervised learning method.

Stale192 years ago
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This model was finetuned on concatenated pairs of interacting proteins in much the same way as PepMLM. It is meant to generate interaction partners for proteins using the masked language modeling capabilities of ESM-2. The model is not well tested, so use with caution.

Stale82 years ago
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ProstT5 is a protein language model (pLM) which can translate between protein sequence and structure. !ProstT5 pre-training and inference

Stale7.8K2 years ago
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## Model Description The "Bird Species Classifier" is a state-of-the-art image classification model designed to identify various bird species from images. It uses the EfficientNet architecture and has been fine-tuned to achieve high accuracy in recognizing a wide range of bird species.

Stale1.6K2 years ago
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QuiltNet-B-32 is a CLIP ViT-B/32 vision-language foundation model trained on the Quilt-1M dataset curated from representative histopathology videos. It can perform various vision-language processing (VLP) tasks such as cross-modal retrieval, image classification, and visual question answering.

Stale9.1K2 years ago

Question Answering Model for the PathoTHREAT Project

Stale32 years ago
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Pre-trained weights and exported models for our spine segmentation project. The source code, designed to reproduce our test results and facilitate training and running inference on your own data, is available on GitHub: https://github.com/MMIV-ML/fastMONAI/tree/master/research

Stale02 years ago

MentaLLaMA-chat-7B is part of the MentaLLaMA project, the first open-source large language model (LLM) series for interpretable mental health analysis with instruction-following capability. This model is finetuned based on the Meta LLaMA2-chat-7B foundation model and the full IMHI instruction…

Stale4862 years ago
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This model may be overfit to some extent (see below). Try running this notebook on the datasets linked to in the notebook. See if you can figure out why the metrics differ so much on the datasets. Is it due to something like sequence similarity in the train/test split?

Stale312 years ago
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+ Model Name: Med_English2Spanish + Model Type: Transformer-based Neural Machine Translation (NMT) Model + Task: English to Spanish Medical Translation

Stale352 years ago
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This model is a fine-tuned model based on the Llama 2_7b architecture. It has been specifically trained on a dataset comprising USMLE (United States Medical Licensing Examination) questions and answers, as well as conversations between doctors and patients.

Stale1242 years ago
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项目地址:https://github.com/iioSnail/chinesemedicalner

Stale983 years ago
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This is a Japanese RoBERTa base model pre-trained on academic articles in medical sciences collected by Japan Science and Technology Agency (JST).

Stale1463 years ago
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