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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

672 of 6,565 resources

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Dans-PersonalityEngine-V1.2.0-24b ⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⢀⠀⠄⠀⡂⠀⠁⡄⢀⠁⢀⣈⡄⠌⠐⠠⠤⠄⡀⠀⠀⠀⠀⠀⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠀⠀⠀⡄⠆⠀⢠⠀⠛⣸⣄⣶⣾⡷⡾⠘⠃⢀⠀⣴⠀⡄⠰⢆⣠⠘⠰⠀⡀⠀⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠀⠀⠀⠀⠃⠀⡋⢀⣤⡿⠟⠋⠁⠀⡠⠤⢇⠋⠀⠈⠃⢀⠀⠈⡡⠤⠀⠀⠁⢄⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠁⡂⠀⠀⣀⣔⣧⠟⠋⠀⢀⡄⠀⠪⣀⡂⢁⠛⢆⠀⠀⠀⢎⢀⠄⢡⠢⠛⠠⡀⠀⠄⠀⠀ ⠀⠀⡀⠡⢑⠌⠈⣧⣮⢾⢏⠁⠀⠀⡀⠠⠦⠈⠀⠞⠑⠁⠀⠀⢧⡄⠈⡜⠷⠒⢸⡇⠐⠇⠿⠈⣖⠂⠀ ⠀⢌⠀⠤⠀⢠⣞⣾⡗⠁⠀⠈⠁⢨⡼⠀⠀⠀⢀⠀⣀⡤⣄⠄⠈⢻⡇⠀⠐⣠⠜⠑⠁⠀⣀⡔⡿⠨⡄…

Idle761 year ago
Python

# fernandoruiz/medgemma-4b-it-Q4_0-GGUF This model was converted to GGUF format from google/medgemma-4b-it using llama.cpp via the ggml.ai's GGUF-my-repo space. Refer to the original model card for more details on the model.

Idle371 year ago
Python

Unsloth Dynamic 2.0 achieves superior accuracy & outperforms other leading quants.

Idle5.7K1 year ago
Python

Unsloth Dynamic 2.0 achieves superior accuracy & outperforms other leading quants.

Idle1.2K1 year ago
Python

# Mol-Llama-3.1-8B-Instruct [Project Page] [Paper] [GitHub]

Idle1491 year ago
Python

🚀 Meerkat-8B is a new instruction-tuned medical AI system of the Meerkat model family. The model was based on the Meta's Llama-3-8B-Instruct model and fine-tuned using our new synthetic dataset consisting of high-quality chain-of-thought reasoning paths sourced from 18 medical textbooks, along…

Idle4261 year ago
Python

🚀 Meerkat-7B-v1.0 is an instruction-tuned medical AI system that surpasses the passing threshold of 60% for the United States Medical Licensing Examination (USMLE) for the first time among all 7B-parameter models. The model was trained using our new synthetic dataset consisting of high-quality…

Idle921 year ago
Python

This is https://huggingface.co/kingabzpro/Qwen-3-32B-Medical-Reasoning applied to https://huggingface.co/Qwen/Qwen3-32B Original model card created by @kingabzpro

Idle3421 year ago
Python

GP-MoLFormer is a class of models pretrained on SMILES string representations of 0.65-1.1B molecules from ZINC and PubChem. This repository is for the model pretrained on all the unique molecules from both datasets.

Idle1.5K1 year ago
Python

Model Repo: xformai/qwen-0.6b-mentalhealth-support Base Model: Qwen/Qwen-0.5B Task: Empathetic Conversational AI for mental health & emotional support Fine-Tuned By: XformAI

Idle71 year ago

### Note: This model is copied version of DNABERT-2 which removes the FlashAttention integration with Trition. This allows the model to be installed off HuggingFace without having to uninstall Triton. Running the below example code yields identical output compared to the original verison.

Idle1.2K1 year ago

## Model Description EYE-Llama_gqa is a large language model specifically designed for ophthalmic question-answering (QA). It is built upon the Llama 2 architecture and fine-tuned on a the EYE-lit and EYE-QA+ dataset.

Idle1651 year ago
Python

## Overview This project focuses on curating and modeling bioactivity data of small molecules targeting immune receptors. Using datasets from ImmtorLig_DB, we applied machine learning techniques to predict interactions between small molecules and immune receptors or cytokines, aiding drug discovery…

Idle01 year ago

本模型基于 trueto/medbert-base-chinese 预训练模型,结合 BiLSTM 和 CRF 构建而成,用于中文医疗命名实体识别(NER)任务。

Idle101 year ago
Idle871 year ago

This model card describes the ClinicalBERT model, which was trained on a large multicenter dataset with a large corpus of 1.2B words of diverse diseases we constructed. We then utilized a large-scale corpus of EHRs from over 3 million patient records to fine tune the base language model.

Idle21.2K1 year ago
Python

This is the full precision (f16) GGUF version of a model trained for medical chatbot and dental implant assistant tasks. It combines general doctor–patient dialogue understanding with domain-specific Q&A derived from Straumann® dental implant system manuals.

Idle191 year ago

This project fine-tunes the meta-llama/Llama-4-Scout-17B-16E-Instruct model using a medical reasoning dataset (FreedomIntelligence/medical-o1-reasoning-SFT) with 4-bit quantization for memory-efficient training.

Idle01 year ago
Python

Covering 12 Major Languages including English, Chinese, French, Hindi, Spanish, Arabic, Russian, Japanese, Korean, German, Italian, Portuguese and 38 Minor Languages So far.

Idle131 year ago

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Idle2771 year ago
Python

Protein solubility is a critical factor in both pharmaceutical research and production processes, as it can significantly impact the quality and function of a protein. This is an example for finetuning ibm/biomed.omics.bl.sm-ted-458m for protein solubility prediction (binary classification) based…

Idle291 year ago

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Idle841 year ago
Python

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Idle271 year ago
Python

This deep learning model is designed for ECG image classification, fine-tuned using ResNet-50. It can classify ECG images into different categories to assist in heart disease detection.

Idle41 year ago
Python

Diabetica: Adapting Large Language Model to Enhance Multiple Medical Tasks in Diabetes Care and Management

Idle711 year ago
Python

An SCVI model and minified AnnData of the Tahoe-100M dataset from Vevo Tx.

Idle01 year ago

PPTStab: Prediction and Designing of thermostable proteins with a desired melting temperature

Idle01 year ago
Python

INDUS-Retriever-small (previously nasa-smd-ibm-st.38m) is a Bi-encoder sentence transformer model, that is fine-tuned from distilled version of nasa-smd-ibm-v0.1 encoder model. it is a smaller version of nasa-smd-ibm-st with better performance, using fewer parameters (shown below).

Idle111 year ago
Python

If you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.

Idle6851 year ago
Python
Idle15.9K1 year ago

한국어 모델을 이용한 SapBERT(Self-alignment pretraining for BERT)입니다. 한·영 의료 용어 사전인 KOSTOM을 사용해 한국어 용어와 영어 용어를 정렬했습니다. 참고: SapBERT, Original Code

Idle191 year ago

This is the base model of GenomeOcean-4B. It is trained with Causal Language Modeling (CLM) and uses a BPE tokenizer with 4096 tokens. It supports a maximum sequence length of 10240 tokens (~50kbp).

Idle8581 year ago
Idle71 year ago

# GPN trained on Arabidopsis thaliana and 7 other Brassicales See https://github.com/songlab-cal/gpn for more details.

Idle5.2K1 year ago
Python

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Idle1.9K1 year ago
Python

The Clinical Assertion and Negation Classification BERT is introduced in the paper Assertion Detection in Clinical Notes: Medical Language Models to the Rescue? . The model helps structure information in clinical patient letters by classifying medical conditions mentioned in the letter into…

Idle1.8K1 year ago
Python

BiomedCLIP is a biomedical vision-language foundation model that is pretrained on PMC-15M, a dataset of 15 million figure-caption pairs extracted from biomedical research articles in PubMed Central, using contrastive learning.

Idle628K1 year ago

Model from this repo. Model used to be in Dropbox/GDrive, leading to issues with download

Idle141 year ago
Python

# FremyCompany/BioLORD-2023 This model was trained using BioLORD, a new pre-training strategy for producing meaningful representations for clinical sentences and biomedical concepts.

Idle445.3K1 year ago
Python

# FremyCompany/BioLORD-2023-M This model was trained using BioLORD, a new pre-training strategy for producing meaningful representations for clinical sentences and biomedical concepts.

Idle37.9K1 year ago
Python

HuatuoGPT-o1-72B

Idle4161 year ago

HuatuoGPT-o1-7B

Idle1.1K1 year ago
Idle58.3K1 year ago

Using llama.cpp release b4404 for quantization.

Idle2.4K1 year ago
Idle321 year ago

# MMedS-Llama3 💻Github Repo 🖨️arXiv Paper

Idle9481 year ago
Python

HuatuoGPT-o1-8B

Idle1.5K1 year ago

Accurate prediction of drug-target binding affinity is essential in the early stages of drug discovery. This is an example of finetuning ibm/biomed.omics.bl.sm-ted-400 the task. Prediction of binding affinities using pKd, the negative logarithm of the dissociation constant, which reflects the…

Idle9.9K1 year ago