Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

16 of 6,584 resources

Directed message passing neural networks for property prediction of molecules and reactions with uncertainty and interpretation.

Active2.4K4 days ago
Python
NOASSERTION

High-Throughput Molecular Dynamics: Programming Environment for Molecular Discovery.

Active2761 week ago
Rich Text Format
NOASSERTION

A collection of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and transport processes.

Active8381 week ago
C++
NOASSERTION

Python Library for Automating Molecular Simulation: input preparation, job execution, file management, output processing and building data workflows.

Active932 weeks ago
Python
NOASSERTION

PyTorch toolkit for deep neural networks in atomistic simulations, implementing SchNet, DimeNet++, PaiNN, and GemNet for molecular dynamics and quantum chemistry (900+ stars)

Active9343 weeks ago
Python
NOASSERTION

A library for processing, analyzing and modeling spectroscopic data.

Active1793 weeks ago
Python
NOASSERTION

Scientific Computing for Chemists with Python is a Jupyter book teaching basic python in chemistry skills, including relevant libraries, and applies them to solving chemical problems.

Active3333 weeks ago
Jupyter Notebook
NOASSERTION

A package to 'build' collections of materials properties from the output of computational materials calculations.

Active684 weeks ago
Python
NOASSERTION

Library of descriptors to aid in the data-mining of materials properties, created by the Lawrence Berkeley National Laboratory.

Active6081 month ago
HTML
NOASSERTION

A molecule manipulation library.

Active2371 month ago
Python
NOASSERTION

atomate2 is a library of computational materials science workflows.

Active3291 month ago
Python
NOASSERTION

This package provides a periodic table of the elements with support for mass, density and xray/neutron scattering information.

Active1732 months ago
Python
NOASSERTION

Universal pretrained neural network potential with charge and magnetic moment awareness, trained on 1.5M+ Materials Project inorganic structures for charge-informed molecular dynamics and phase diagram prediction (Berkeley, Nature Machine Intelligence 2023 Cover)

Idle3996 months ago
Python
NOASSERTION

A [Jupyter](https://jupyter.org/) widget to interactively view molecular structures and trajectories.

Idle9266 months ago
Jupyter Notebook
NOASSERTION

NIST's open-source platform for data-driven atomistic materials design, integrating DFT datasets (JARVIS-DFT), machine learning property prediction (JARVIS-ML), and a comprehensive leaderboard for benchmarking materials AI methods across the periodic table (384+ stars)

Idle3901 year ago
Python
NOASSERTION

Descriptor computation(chemistry) and (optional) storage for machine learning.

Idle2801 year ago
Python
NOASSERTION