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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

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DCAT is an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web

Identifies the type of aggregation used to combine related categories, usually within a common branch of a hierarchy, to provide information at a broader level than the level at which detailed observations are taken. (From: The OECD Glossary of Statistical Terms)

Describes the entity being analyzed in the study or variable. This vocabulary can also be used to describe the unit of observation, which is the unit being observed, or from which data are collected. The unit of observation can be the same as, or different from the unit of analysis.

Standard set of characters upon which many character encodings are based (Wikipedia).

Describes the degree of similarity between two items or schemes (collections of items).

A classification of contributor roles.

Includes a typology of data sources.

Identifies the type of data, which has a bearing on the acceptable data values, the operations that can be performed with the data, and the ways in which the data are stored.

Specifies the type of date.

Describes the physical format(s) of the data documented in the logical product(s) of a study unit.

Describes the level of proficiency of an individual in a natural language.

Specifies the event happening over the data life cycle that is considered significant enough to document.

The procedure, technique, or mode of inquiry used to attain the data.

Specifies the type of numeric data.

Indicates the entity that provided the information carried by the variable.

A typology of sampling methods.

Indicates the statistical software package used in the production/processing/dissemination of the data. Data collection software is not covered in this list.

Specifies the type of summary statistic. Summary statistics are a single number representation of the characteristics of a set of values.

Describes the time dimension of the data collection.

Time zone specification as an offset from UTC (Coordinated Universal Time) in terms of hours and minutes.

Identifies the type of address entered as contact information for an individual or an organization.

Specifies the rationale for creating a concept group.

Indicates the frequency of data collection events.

Includes a typology of data collection instruments.

Includes a typology of notes.

Identifies the type of telephone entered as contact information for an individual or an organization.

A typology of methods used to translate data collection instruments, including questionnaires, individual questions, measurements, data capture flows, etc.

Cell lines used in the Dependency Map (DepMap). Highly related to CCLE Cells.

The Enzyme Nomenclature (also known as the Enzyme Commission Code) is a species-agnostic controlled vocabulary for specific enzymes and an associated hierarchical classification into 7 main categories. The Enzyme Nomenclature is maintained by the [Nomenclature Committee](https://iubmb.org/about/committees/nomenclature-committee/) of the International Union of Biochemistry and Molecular Biology (IUBMB). A detailed history of the nomenclature since the 1950s can be found [here](https://iubmb.qmul.ac.uk/enzyme/history.html). There are few notable resources providing access to the Enzyme Nomenclature: <table class="table table-striped"><thead><tr><th>Website</th><th>Homepage</td><th>Notes</td></tr></thead><tbody><tr><td>ExplorEnz</td><td><a href="https://www.enzyme-database.org">https://www.enzyme-database.org</a></td><td>This is the resource officially recommended by IUBMB</td></tr><tr><td>IUBMB (via by Queen Mary)</td><td><a href="https://iubmb.qmul.ac.uk/enzyme">https://iubmb.qmul.ac.uk/enzyme</a></td><td>This is a web-based version of the <a href="https://archive.org/details/enzymenomenclatu0000inte_d6c2">1992 publication</a>.</td></tr><tr><td>IntEnz</td><td><a href="https://www.ebi.ac.uk/intenz">https://www.ebi.ac.uk/intenz</a></td><td>Shutdown in 2024</td></tr><tr><td>ExPaSy</td><td><a href="https://enzyme.expasy.org">https://enzyme.expasy.org</a></td></tr><tr><td>EnzymePortal</td><td><a href="https://www.ebi.ac.uk/enzymeportal">https://www.ebi.ac.uk/enzymeportal</a></td><td></td></tr></tbody></table>

The Electron Microscopy (EM) Glossary is a widespread community effort to harmonize terminology in the electron and ion microscopies. It is created in a not-for profit collaboration between academic and non-university research institutions including domain and metadata experts. It provides harmonized terminology for application level semantic artifacts to source from and align with. [from homepage]

The EOL ontology describes environmental conditions of livestock farms. More specifically, it describes the feeding modalities, the environment, the structure of livestock farms and rearing systems.

European Science Vocabulary (EuroSciVoc) is the taxonomy of fields of science based on OECD's 2015 Frascati Manual taxonomy. It was extended with fields of science categories extracted from CORDIS content through a semi-automatic process developed with Natural Language Processing (NLP) techniques. (from homepage)

EuroVoc is the EU's multilingual and multidisciplinary thesaurus. It contains keywords, organized in 21 domains and 127 sub-domains, which are used to describe the content of documents in EUR-Lex. [from homepage]