Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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The procedure, technique, or mode of inquiry used to attain the data.
Indicates the entity that provided the information carried by the variable.
Indicates the statistical software package used in the production/processing/dissemination of the data. Data collection software is not covered in this list.
Specifies the type of summary statistic. Summary statistics are a single number representation of the characteristics of a set of values.
Time zone specification as an offset from UTC (Coordinated Universal Time) in terms of hours and minutes.
Identifies the type of address entered as contact information for an individual or an organization.
Identifies the type of telephone entered as contact information for an individual or an organization.
A typology of methods used to translate data collection instruments, including questionnaires, individual questions, measurements, data capture flows, etc.
Cell lines used in the Dependency Map (DepMap). Highly related to CCLE Cells.
The Enzyme Nomenclature (also known as the Enzyme Commission Code) is a species-agnostic controlled vocabulary for specific enzymes and an associated hierarchical classification into 7 main categories. The Enzyme Nomenclature is maintained by the [Nomenclature Committee](https://iubmb.org/about/committees/nomenclature-committee/) of the International Union of Biochemistry and Molecular Biology (IUBMB). A detailed history of the nomenclature since the 1950s can be found [here](https://iubmb.qmul.ac.uk/enzyme/history.html). There are few notable resources providing access to the Enzyme Nomenclature: <table class="table table-striped"><thead><tr><th>Website</th><th>Homepage</td><th>Notes</td></tr></thead><tbody><tr><td>ExplorEnz</td><td><a href="https://www.enzyme-database.org">https://www.enzyme-database.org</a></td><td>This is the resource officially recommended by IUBMB</td></tr><tr><td>IUBMB (via by Queen Mary)</td><td><a href="https://iubmb.qmul.ac.uk/enzyme">https://iubmb.qmul.ac.uk/enzyme</a></td><td>This is a web-based version of the <a href="https://archive.org/details/enzymenomenclatu0000inte_d6c2">1992 publication</a>.</td></tr><tr><td>IntEnz</td><td><a href="https://www.ebi.ac.uk/intenz">https://www.ebi.ac.uk/intenz</a></td><td>Shutdown in 2024</td></tr><tr><td>ExPaSy</td><td><a href="https://enzyme.expasy.org">https://enzyme.expasy.org</a></td></tr><tr><td>EnzymePortal</td><td><a href="https://www.ebi.ac.uk/enzymeportal">https://www.ebi.ac.uk/enzymeportal</a></td><td></td></tr></tbody></table>
The Electron Microscopy (EM) Glossary is a widespread community effort to harmonize terminology in the electron and ion microscopies. It is created in a not-for profit collaboration between academic and non-university research institutions including domain and metadata experts. It provides harmonized terminology for application level semantic artifacts to source from and align with. [from homepage]
The EOL ontology describes environmental conditions of livestock farms. More specifically, it describes the feeding modalities, the environment, the structure of livestock farms and rearing systems.
European Science Vocabulary (EuroSciVoc) is the taxonomy of fields of science based on OECD's 2015 Frascati Manual taxonomy. It was extended with fields of science categories extracted from CORDIS content through a semi-automatic process developed with Natural Language Processing (NLP) techniques. (from homepage)
EuroVoc is the EU's multilingual and multidisciplinary thesaurus. It contains keywords, organized in 21 domains and 127 sub-domains, which are used to describe the content of documents in EUR-Lex. [from homepage]
The European Environment Information and Observation Network (Eionet) is a partnership network of the European Environment Agency (EEA) and its 38 member and cooperating countries. The EEA is responsible for developing Eionet and coordinating its activities together with National Focal Points (NFPs) in the countries. This terminology supports those efforts.
The GeoNames geographical database covers all countries and contains over eleven million placenames that are available for download free of charge.
All geographical features in GeoNames are categorized into one out of nine feature classes and further subcategorized into one out of 645 feature codes.
The Category Scheme Election Studies provides the ability to categorize election studies at the question and/or variable level.