Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

5 of 6,234 resources

Research agent system deeply integrated with Zotero supporting Agent Mode, skills, multi-model backends (OpenAI-compatible, Claude Code, WebChat, Codex), and MinerU PDF parsing for literature Q&A, summarization, figure inspection, and source comparison (1.3K+ stars, 2026)

Active2.1K2 weeks ago
TypeScript
AGPL-3.0

Multi-PDF conversation, retrieval, and citation in Zotero with commercial/local models (Ollama), MCP support

Active2.5K1 month ago
JavaScript
AGPL-3.0

Unified framework for state-of-the-art pre-trained bio foundation models across genomics and transcriptomics, providing standardized interfaces and pipelines for DNA, RNA, and single-cell models including Evo 2, Geneformer, scGPT, and UCE with streamlined inference, benchmarking, and fine-tuning workflows (213+ stars, 2024-2025)

Active2191 month ago
Python
AGPL-3.0

Classic open-source plugin for document Q&A and summarization within Zotero

Active7.2K2 months ago
TypeScript
AGPL-3.0

Comprehensive toolkit for high-quality PDF content extraction with layout detection, formula recognition, and OCR

Idle9.8K1 year ago
Python
AGPL-3.0