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jaxQTL is a flexible and efficient sc-eQTL mapping framework using count-based models, designed to analyze sparse counts in scRNA-seq data and large datasets. It has been shown to identify more eGenes compared with existing approaches, improving our ability to identify distal eQTLs.

Plasmid Copy Number Estimator is a tool to estimate the copy numbers of plasmids detected in an assembled genome

Databank of optimised macromolecular structures. PDB-REDO entries are refined, rebuilt and validated with one consistent protocol using the equivalent entry in the Protein Data Bank and its experimental data. PDB-REDO entries typically have higher structural quality and a better fit to the experimental data.

D-GENIES – for Dot plot large Genomes in an Interactive, Efficient and Simple way – is an online tool designed to compare two genomes. It supports large genome and you can interact with the dot plot to improve the visualization.

SEACR: Sparse Enrichment Analysis for CUT&RUN

Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly

Simple test framework for Nextflow pipelines