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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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73 of 7,765 resources matching “protein”
Showing 1–50
HuggingFaceBio/Carbon-A-1.2B
by HuggingFaceBioA DNA annotation model from the Carbon family.
HuggingFaceBio/Carbon-X
by HuggingFaceBioBlog | Hugging Face Bio | Code
bios-labs/RFD4-Proteina-MLX-fp16
by bios-labsprotein binders with RFD4-Proteina entirely on a MacBook: target
HuggingFaceBio/Carbon-X-SFT
by HuggingFaceBioBlog | Carbon-X | Carbon-X-Base | Hugging Face Bio | Code
nvidia/RFD4-Proteina-Diffusers
by nvidiaSequence and structure, designed together.Baker Lab × NVIDIA GenAIR Project page
lighteternal/biodecision-v2-4b
by lighteternalA System-1 decision model for biomedicine, pharma and clinical
insilicomedicine/longevity-llm
by insilicomedicineA domain-adapted Qwen3.5-9B for aging and longevity biology. L
drzo/ESMC-6B
by drzoprotein language model that has learned the rules of protein
This model card provides an overview of the intended use
state-of-the-art protein language model trained on billions of protein sequences…
state-of-the-art protein language model trained on billions of protein sequences…
state-of-the-art protein language model trained on billions of protein sequences…
biohub/ESMC-6B
by biohubprotein language model that has learned the rules of protein
biohub/ESMC-600M
by biohubprotein language model that has learned the rules of protein
biohub/ESMC-300M
by biohubprotein language model that has learned the rules of protein
biohub/ESMFold2
by biohubprotein structure prediction and design that defines a new frontier
biohub/ESMFold2-Fast
by biohubprotein structure prediction and design that defines a new frontier
ctheodoris/Geneformer
by ctheodoris# Geneformer Geneformer is a foundational transformer model pretrained on a
Aurigene-AI/ChemFM-1B
by Aurigene-AISee the upstream model card for full details, training data
loveCloud/OmniTCR
by loveCloudOmniTCR is a component-aware autoregressive foundation model for learning
tzcfly/PertMind
by tzcflyPertMind is a biological language model built around a central
NavitraTechnologies01/navikinase-1.0
by NavitraTechnologies01protein language model for the phosphotransferase superfamily (EC 2.7.-: protein
protein variant classifier that predicts whether a mutated protein sequence
GrimSqueaker/ProtSent-V2-ESMC-300M
by GrimSqueakerprotein embeddings where biological similarity maps to embedding proximity. Intended
GrimSqueaker/ProtSent-V2.5-35M
by GrimSqueakerProtSent-V2 35M plus one more contrastive pass on a
GrimSqueaker/ProtSent-V2-150M
by GrimSqueakerprotein embeddings where biological similarity maps to embedding proximity. Intended
Trinity-Mini-AI-Scientist
introvoyz041/DrugGen-2
by introvoyz041SMILES structures based on both disease pathways and protein sequence.
trillionlabs/TxGravity-30B-A5B
by trillionlabsprotein–protein and peptide–MHC interaction, and more — following the…
Phsntom/ESMFold2-Fast
by Phsntomprotein structure prediction and design that defines a new frontier
alimotahharynia/DrugGen-2
by alimotahharyniaSMILES structures based on both disease pathways and protein sequence.
650M with LoRA for predicting protein subcellular localization (10 classes).
trillionlabs/Gravity-bio-16B-A3B
by trillionlabsGravity-bio-16B-A3B is a biology-focus midtrained model
fairydance/molexar-10m-base
by fairydanceMolexar-10M Base is the unconditional base model for Molexar
fairydance/molexar-10m-omni
by fairydanceMolexar-10M Omni is the universal multi-condition model for
both molecules and proteins within a single decoder-only architecture.
promptable and aligned protein language models for protein sequence generation.
Babajaan/KAU-BioMedLLM
by BabajaanKAU-BioMedLLM is a research prototype for source-grounded biomedical
biohub/esm3-sm-open-v1
by biohubprotein sequences, 236 million protein structures, and 539 million proteins
This model card provides an overview of the intended use
This model card provides an overview of the intended use
biohub/esmc-600m-2024-12
by biohubThis set of model weights was released with the GitHub
protein language model for protein sequence generation. It is the smallest
protein language model for protein sequence generation. It is the largest
poolside-laguna-hackathon/protein-ligand-design
by poolside-laguna-hackathon!Protein-ligand interaction header
biohub/esmc-300m-2024-12
by biohubThis set of model weights was released with the GitHub
Hamdan003/inventmol-r1
by Hamdan003Target-Conditioned Molecular Ideation Model for Drug Discovery Research
Gemma 4 E2B fine-tuned on 225K drug–target pairs
macwiatrak/bacformer-large-masked-MAG
by macwiatrak- 2025-05-15: We identified a bug in the Bacformer
- 2025-05-15: We identified a bug in the Bacformer