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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

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# Medical-Llama3-v2 Fine-Tuned Llama3 for Medical Q&A This repository provides a fine-tuned version of the powerful Llama3 8B model, specifically designed to answer medical questions in an informative way. It leverages the rich knowledge contained in the AI Medical Chatbot dataset…

Stale332 years ago
Python

This is an official model checkpoint for Asclepius-Mistral-7B-v0.3 (arxiv). This model is an enhanced version of Asclepius-7B, by replacing the base model with Mistral-7B-v0.3 and increasing the max sequence length to 8192.

Stale2462 years ago
Python

This is an official model checkpoint for Asclepius-Llama3-8B (arxiv). This model is an enhanced version of Asclepius-7B, by replacing the base model with Llama-3 and increasing the max sequence length to 8192.

Stale852 years ago
Python

The Me-LLaMA model consists of two foundation models: Me-LLaMA 13B and Me-LLaMA 70B, along with their chat-enhanced counterparts, Me-LLaMA 13B-chat and Me-LLaMA 70B-chat. These models are designed for superior chat and instruction-following capabilities.

Stale02 years ago
Python

If you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.

Stale4442 years ago
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This model is developed by Basel Anaya.

Stale212 years ago
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# MMedLM 💻Github Repo 🖨️arXiv Paper

Stale3292 years ago
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This model is deprecated. please use the updated sentence transformer model here: https://huggingface.co/nasa-impact/nasa-smd-ibm-st-v2. Alternatively, you can also use distilled version of the model here: https://huggingface.co/nasa-impact/nasa-ibm-st.38m

Stale142 years ago
Python

# JSL-MedLlama-3-8B-v2.0

Stale5962 years ago
Python

Reference: R. Luu and M.J. Buehler, "BioinspiredLLM: Conversational Large Language Model for the Mechanics of Biological and Bio-Inspired Materials," Adv. Science, 2023, DOI: https://doi.org/10.1002/advs.202306724

Stale612 years ago
Python

Medical mT5: An Open-Source Multilingual Text-to-Text LLM for the Medical Domain

Stale382 years ago
Python

# ChemLLM-7B-Chat-1.5-DPO: LLM for Chemistry and Molecule Science ChemLLM-7B-Chat-1.5-DPO, The First Open-source Large Language Model for Chemistry and Molecule Science, Build based on InternLM-2 with ❤

Stale4182 years ago
Python

EndoViT

Stale4792 years ago
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This model is a fine-tuned version of DeBERTa on the PubMED Dataset.

Stale32.6K2 years ago
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Using llama.cpp release b2440 for quantization.

Stale6152 years ago
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!image/png

Stale3752 years ago
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## 💡 Model description This repo contains a large molecular generative model built with molecular language SELFIES.

Stale3212 years ago
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Using llama.cpp commit fa97464 for quantization.

Stale2782 years ago
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!image/png

Stale1152 years ago
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# Mr-Grammatology-clinical-problems-Mistral-7B-0.5 !image/png

Stale552 years ago
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Abstract:

Stale33K2 years ago
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This is a merge of pre-trained language models created using mergekit.

Stale7942 years ago
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Abstract:

Stale8752 years ago
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This is a merge of pre-trained language models created using mergekit.

Stale4212 years ago
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This is a merge of pre-trained language models created using mergekit.

Stale3K2 years ago
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SMILES2IUPAC-canonical-base was designed to accurately translate SMILES chemical names to IUPAC standards.

Stale5.1K2 years ago
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# TinyLlama-1.1B

Stale1192 years ago
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The T5 Large for Medical Text Summarization is a specialized variant of the T5 transformer model, fine-tuned for the task of summarizing medical text. This model is designed to generate concise and coherent summaries of medical documents, research papers, clinical notes, and other…

Stale1.7K2 years ago
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This is official model checkpoint for Asclepius-13B (arxiv). This model is the first publicly shareable clinical LLM, trained with synthetic data.

Stale582 years ago
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Google ViT model is finetuned on lung and colon histopathology image classification dataset. The dataset is available on Kaggle.

Stale472 years ago
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Stale1852 years ago
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Details coming soon

Stale2912 years ago
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# Meditron 70B - GGUF - Model creator: EPFL LLM Team - Original model: Meditron 70B

Stale7962 years ago
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A Vision Transformer (ViT) image classification model. \ Trained on 15M histology patches from PAIP and TCGA. \ Used the MoCo v3 self supervised learning method.

Stale192 years ago
Python

This is Vision Transformer model trained for cancer classification. To make single model to predict any cancer, I trained this ViT model. following are the cancer types that model can predict: Brain cancer Breast Cancer (histopathology) Lung & Colon Cancer (histopathology) Cervical Caner Kidney…

Stale112 years ago
Python

This model was finetuned on concatenated pairs of interacting proteins in much the same way as PepMLM. It is meant to generate interaction partners for proteins using the masked language modeling capabilities of ESM-2. The model is not well tested, so use with caution.

Stale82 years ago
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ProstT5 is a protein language model (pLM) which can translate between protein sequence and structure. !ProstT5 pre-training and inference

Stale7.8K2 years ago
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A Vision Transformer (ViT) image classification model. \ Trained by Owkin on 40 million pan-cancer histology tiles from TCGA-COAD.

Stale1K2 years ago
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A Vision Transformer (ViT) image classification model. \ Trained by Owkin on 40M pan-cancer histology tiles from TCGA. \ Fine-tuned on LC25000's lung subset.

Stale212 years ago
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## Model Description The "Bird Species Classifier" is a state-of-the-art image classification model designed to identify various bird species from images. It uses the EfficientNet architecture and has been fine-tuned to achieve high accuracy in recognizing a wide range of bird species.

Stale1.6K2 years ago
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A Vision Transformer (ViT) image classification model. \ Trained on 2M histology patches from TCGA-BRCA.

Stale822 years ago
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This is a medicine-focussed mistral fine tuned using keivalya/MedQuad-MedicalQnADataset

Stale342 years ago
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Question Answering Model for the PathoTHREAT Project

Stale122 years ago
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MentaLLaMA-chat-7B is part of the MentaLLaMA project, the first open-source large language model (LLM) series for interpretable mental health analysis with instruction-following capability. This model is finetuned based on the Meta LLaMA2-chat-7B foundation model and the full IMHI instruction…

Stale4863 years ago
Python

This model may be overfit to some extent (see below). Try running this notebook on the datasets linked to in the notebook. See if you can figure out why the metrics differ so much on the datasets. Is it due to something like sequence similarity in the train/test split?

Stale313 years ago
Python

+ Model Name: Med_English2Spanish + Model Type: Transformer-based Neural Machine Translation (NMT) Model + Task: English to Spanish Medical Translation

Stale353 years ago
Python

This model is a fine-tuned model based on the Llama 2_7b architecture. It has been specifically trained on a dataset comprising USMLE (United States Medical Licensing Examination) questions and answers, as well as conversations between doctors and patients.

Stale1243 years ago
Python