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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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# Medical-Llama3-v2 Fine-Tuned Llama3 for Medical Q&A This repository provides a fine-tuned version of the powerful Llama3 8B model, specifically designed to answer medical questions in an informative way. It leverages the rich knowledge contained in the AI Medical Chatbot dataset…
This is an official model checkpoint for Asclepius-Mistral-7B-v0.3 (arxiv). This model is an enhanced version of Asclepius-7B, by replacing the base model with Mistral-7B-v0.3 and increasing the max sequence length to 8192.
This is an official model checkpoint for Asclepius-Llama3-8B (arxiv). This model is an enhanced version of Asclepius-7B, by replacing the base model with Llama-3 and increasing the max sequence length to 8192.
clinicalnlplab/me-llama
by clinicalnlplabThe Me-LLaMA model consists of two foundation models: Me-LLaMA 13B and Me-LLaMA 70B, along with their chat-enhanced counterparts, Me-LLaMA 13B-chat and Me-LLaMA 70B-chat. These models are designed for superior chat and instruction-following capabilities.
mradermacher/Medichat-V2-Llama3-8B-GGUF
by mradermacherIf you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.
This model is developed by Basel Anaya.
Henrychur/MMed-Llama-3-8B
by Henrychur# MMedLM 💻Github Repo 🖨️arXiv Paper
nasa-impact/nasa-smd-ibm-st
by nasa-impactThis model is deprecated. please use the updated sentence transformer model here: https://huggingface.co/nasa-impact/nasa-smd-ibm-st-v2. Alternatively, you can also use distilled version of the model here: https://huggingface.co/nasa-impact/nasa-ibm-st.38m
johnsnowlabs/JSL-MedLlama-3-8B-v2.0
by johnsnowlabs# JSL-MedLlama-3-8B-v2.0
Reference: R. Luu and M.J. Buehler, "BioinspiredLLM: Conversational Large Language Model for the Mechanics of Biological and Bio-Inspired Materials," Adv. Science, 2023, DOI: https://doi.org/10.1002/advs.202306724
clinicalnlplab/finetuned-Llama-2-13b-hf-PubmedQA
by clinicalnlplabMedical mT5: An Open-Source Multilingual Text-to-Text LLM for the Medical Domain
# ChemLLM-7B-Chat-1.5-DPO: LLM for Chemistry and Molecule Science ChemLLM-7B-Chat-1.5-DPO, The First Open-source Large Language Model for Chemistry and Molecule Science, Build based on InternLM-2 with ❤
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This model is a fine-tuned version of DeBERTa on the PubMED Dataset.
Using llama.cpp release b2440 for quantization.
Goekdeniz-Guelmez/Hyperion-2.0-Mistral-7B-GGUF
by Goekdeniz-Guelmez!image/png
zjunlp/MolGen-7b
by zjunlp## 💡 Model description This repo contains a large molecular generative model built with molecular language SELFIES.
Using llama.cpp commit fa97464 for quantization.
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# Mr-Grammatology-clinical-problems-Mistral-7B-0.5 !image/png
This is a merge of pre-trained language models created using mergekit.
BioMistral/BioMistral-7B-SLERP
by BioMistralThis is a merge of pre-trained language models created using mergekit.
BioMistral/BioMistral-7B-DARE
by BioMistralThis is a merge of pre-trained language models created using mergekit.
knowledgator/SMILES2IUPAC-canonical-base
by knowledgatorSMILES2IUPAC-canonical-base was designed to accurately translate SMILES chemical names to IUPAC standards.
muzammil-eds/tinyllama-2.5T-Clinical-v2
by muzammil-eds# TinyLlama-1.1B
The T5 Large for Medical Text Summarization is a specialized variant of the T5 transformer model, fine-tuned for the task of summarizing medical text. This model is designed to generate concise and coherent summaries of medical documents, research papers, clinical notes, and other…
starmpcc/Asclepius-13B
by starmpccThis is official model checkpoint for Asclepius-13B (arxiv). This model is the first publicly shareable clinical LLM, trained with synthetic data.
TachyHealth/Thealth_Mixtral-8x7B
by TachyHealthGoogle ViT model is finetuned on lung and colon histopathology image classification dataset. The dataset is available on Kaggle.
epfl-llm/meditron-70b
by epfl-llmDetails coming soon
# Meditron 70B - GGUF - Model creator: EPFL LLM Team - Original model: Meditron 70B
A Vision Transformer (ViT) image classification model. \ Trained on 15M histology patches from PAIP and TCGA. \ Used the MoCo v3 self supervised learning method.
ErnestBeckham/MulticancerViT
by ErnestBeckhamThis is Vision Transformer model trained for cancer classification. To make single model to predict any cancer, I trained this ViT model. following are the cancer types that model can predict: Brain cancer Breast Cancer (histopathology) Lung & Colon Cancer (histopathology) Cervical Caner Kidney…
AmelieSchreiber/esm_interact
by AmelieSchreiberThis model was finetuned on concatenated pairs of interacting proteins in much the same way as PepMLM. It is meant to generate interaction partners for proteins using the masked language modeling capabilities of ESM-2. The model is not well tested, so use with caution.
Rostlab/ProstT5
by RostlabProstT5 is a protein language model (pLM) which can translate between protein sequence and structure. !ProstT5 pre-training and inference
A Vision Transformer (ViT) image classification model. \ Trained by Owkin on 40 million pan-cancer histology tiles from TCGA-COAD.
A Vision Transformer (ViT) image classification model. \ Trained by Owkin on 40M pan-cancer histology tiles from TCGA. \ Fine-tuned on LC25000's lung subset.
## Model Description The "Bird Species Classifier" is a state-of-the-art image classification model designed to identify various bird species from images. It uses the EfficientNet architecture and has been fine-tuned to achieve high accuracy in recognizing a wide range of bird species.
A Vision Transformer (ViT) image classification model. \ Trained on 2M histology patches from TCGA-BRCA.
Tonic/mistralmed
by TonicThis is a medicine-focussed mistral fine tuned using keivalya/MedQuad-MedicalQnADataset
Galahad3x/QAModelForPatho
by Galahad3xQuestion Answering Model for the PathoTHREAT Project
MentaLLaMA-chat-7B is part of the MentaLLaMA project, the first open-source large language model (LLM) series for interpretable mental health analysis with instruction-following capability. This model is finetuned based on the Meta LLaMA2-chat-7B foundation model and the full IMHI instruction…
This model may be overfit to some extent (see below). Try running this notebook on the datasets linked to in the notebook. See if you can figure out why the metrics differ so much on the datasets. Is it due to something like sequence similarity in the train/test split?
ayoubkirouane/Med_English2Spanish
by ayoubkirouane+ Model Name: Med_English2Spanish + Model Type: Transformer-based Neural Machine Translation (NMT) Model + Task: English to Spanish Medical Translation
This model is a fine-tuned model based on the Llama 2_7b architecture. It has been specifically trained on a dataset comprising USMLE (United States Medical Licensing Examination) questions and answers, as well as conversations between doctors and patients.