Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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373 of 6,565 resources
Showing 301–350
nasa-impact/nasa-smd-ibm-v0.1
by nasa-impactIndus (previously known as nasa-smd-ibm-v0.1) is a RoBERTa-based, Encoder-only transformer model, domain-adapted for NASA Science Mission Directorate (SMD) applications. It's fine-tuned on scientific journals and articles relevant to NASA SMD, aiming to enhance natural language technologies like…
nasa-impact/nasa-smd-ibm-st-v2
by nasa-impactIndus-Retriever (nasa-smd-ibm-st-v2) is a Bi-encoder sentence transformer model, that is fine-tuned from nasa-smd-ibm-v0.1 encoder model. it is an updated version of nasa-smd-ibm-st with better performance (shown below). It's trained with 271 million examples along with a domain-specific dataset of…
digitalhealth-healthyliving/MediFlow
by digitalhealth-healthylivingMediFlow se trata de un modelo inicializado con xlnet-large-cased y adaptado con preguntas y especialidades para poder realizar Derivaciones Automatizadas en Servicios Hospitalarios. El dataset se puede encontrar de manera pública y se trata de MedDialog EN.
mradermacher/Palmyra-Med-70B-GGUF
by mradermacherIf you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.
> [!IMPORTANT] > Better using New version of ChemLLM! > AI4Chem/ChemLLM-7B-Chat-1.5-DPO or AI4Chem/ChemLLM-7B-Chat-1.5-SFT
yerevann/chemma-2b
by yerevannChemma-2B is a continually pretrained gemma-2b model for organic molecules. It is pretrained on 40B tokens covering 110M+ molecules from PubChem as well as their chemical properties (molecular weight, synthetic accessibility score, drug-likeness etc.) and similarities (Tanimoto distance between…
qiuhuachuan/PsyChat
by qiuhuachuan## Quick Start ```Python from transformers import AutoTokenizer, AutoModel
ChemFIE-SA is a BERT-like sequence classifier for predicting synthesis accessibility given a SELFIES string of a compound, fine-tuned from gbyuvd/chemselfies-base-bertmlm on DeepSA's expanded dataset from Wang et al. 2023.
This model is a BERT-like sequence classifier for 221 human protein drug targets, fine-tuned from gbyuvd/chemselfies-base-bertmlm on a dataset derived ChemBL34 (Zdrazil et al. 2023). It predicts potential drug targets using chemical structures represented as SELFIES (Self-Referencing Embedded…
RaphaelMourad/Mistral-DNA-v1-138M-bacteria
by RaphaelMouradThe Mistral-DNA-v1-138M-bacteria Large Language Model (LLM) is a pretrained generative DNA text model with 17.31M parameters x 8 experts = 138.5M parameters. It is derived from Mistral-7B-v0.1 model, which was simplified for DNA: the number of layers and the hidden size were reduced.
tmberooney/medllama-merged
by tmberooneyModel Card for "medllama" ---------------------------
sagawa/ReactionT5v1-forward
by sagawaThis is a ReactionT5 pre-trained to predict the products of reactions.
InstaDeepAI/agro-nucleotide-transformer-1b
by InstaDeepAI## Model Overview AgroNT is a DNA language model trained on primarily edible plant genomes. More specifically, AgroNT uses the transformer architecture with self-attention and a masked language modeling objective to leverage highly available genotype data from 48 different plant speices to learn…
mradermacher/SEMIKONG-70B-v2-GGUF
by mradermacherIf you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.
# Medical-Llama3-v2 Fine-Tuned Llama3 for Medical Q&A This repository provides a fine-tuned version of the powerful Llama3 8B model, specifically designed to answer medical questions in an informative way. It leverages the rich knowledge contained in the AI Medical Chatbot dataset…
This is an official model checkpoint for Asclepius-Mistral-7B-v0.3 (arxiv). This model is an enhanced version of Asclepius-7B, by replacing the base model with Mistral-7B-v0.3 and increasing the max sequence length to 8192.
This is an official model checkpoint for Asclepius-Llama3-8B (arxiv). This model is an enhanced version of Asclepius-7B, by replacing the base model with Llama-3 and increasing the max sequence length to 8192.
mradermacher/Medichat-V2-Llama3-8B-GGUF
by mradermacherIf you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.
Henrychur/MMed-Llama-3-8B
by Henrychur# MMedLM 💻Github Repo 🖨️arXiv Paper
nasa-impact/nasa-smd-ibm-st
by nasa-impactThis model is deprecated. please use the updated sentence transformer model here: https://huggingface.co/nasa-impact/nasa-smd-ibm-st-v2. Alternatively, you can also use distilled version of the model here: https://huggingface.co/nasa-impact/nasa-ibm-st.38m
johnsnowlabs/JSL-MedLlama-3-8B-v2.0
by johnsnowlabs# JSL-MedLlama-3-8B-v2.0
Reference: R. Luu and M.J. Buehler, "BioinspiredLLM: Conversational Large Language Model for the Mechanics of Biological and Bio-Inspired Materials," Adv. Science, 2023, DOI: https://doi.org/10.1002/advs.202306724
clinicalnlplab/finetuned-Llama-2-13b-hf-PubmedQA
by clinicalnlplabMedical mT5: An Open-Source Multilingual Text-to-Text LLM for the Medical Domain
# ChemLLM-7B-Chat-1.5-DPO: LLM for Chemistry and Molecule Science ChemLLM-7B-Chat-1.5-DPO, The First Open-source Large Language Model for Chemistry and Molecule Science, Build based on InternLM-2 with ❤
!image/png
This model is a fine-tuned version of DeBERTa on the PubMED Dataset.
Using llama.cpp release b2440 for quantization.
Goekdeniz-Guelmez/Hyperion-2.0-Mistral-7B-GGUF
by Goekdeniz-Guelmez!image/png
Using llama.cpp commit fa97464 for quantization.
!image/png
# Mr-Grammatology-clinical-problems-Mistral-7B-0.5 !image/png
This is a merge of pre-trained language models created using mergekit.
BioMistral/BioMistral-7B-SLERP
by BioMistralThis is a merge of pre-trained language models created using mergekit.
BioMistral/BioMistral-7B-DARE
by BioMistralThis is a merge of pre-trained language models created using mergekit.
knowledgator/SMILES2IUPAC-canonical-base
by knowledgatorSMILES2IUPAC-canonical-base was designed to accurately translate SMILES chemical names to IUPAC standards.
muzammil-eds/tinyllama-2.5T-Clinical-v2
by muzammil-eds# TinyLlama-1.1B
The T5 Large for Medical Text Summarization is a specialized variant of the T5 transformer model, fine-tuned for the task of summarizing medical text. This model is designed to generate concise and coherent summaries of medical documents, research papers, clinical notes, and other…
starmpcc/Asclepius-13B
by starmpccThis is official model checkpoint for Asclepius-13B (arxiv). This model is the first publicly shareable clinical LLM, trained with synthetic data.
TachyHealth/Thealth_Mixtral-8x7B
by TachyHealthepfl-llm/meditron-70b
by epfl-llmDetails coming soon
# Meditron 70B - GGUF - Model creator: EPFL LLM Team - Original model: Meditron 70B
A Vision Transformer (ViT) image classification model. \ Trained on 15M histology patches from PAIP and TCGA. \ Used the MoCo v3 self supervised learning method.
AmelieSchreiber/esm_interact
by AmelieSchreiberThis model was finetuned on concatenated pairs of interacting proteins in much the same way as PepMLM. It is meant to generate interaction partners for proteins using the masked language modeling capabilities of ESM-2. The model is not well tested, so use with caution.
Rostlab/ProstT5
by RostlabProstT5 is a protein language model (pLM) which can translate between protein sequence and structure. !ProstT5 pre-training and inference
## Model Description The "Bird Species Classifier" is a state-of-the-art image classification model designed to identify various bird species from images. It uses the EfficientNet architecture and has been fine-tuned to achieve high accuracy in recognizing a wide range of bird species.