Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

373 of 6,565 resources

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Indus (previously known as nasa-smd-ibm-v0.1) is a RoBERTa-based, Encoder-only transformer model, domain-adapted for NASA Science Mission Directorate (SMD) applications. It's fine-tuned on scientific journals and articles relevant to NASA SMD, aiming to enhance natural language technologies like…

Idle551 year ago
Python

Indus-Retriever (nasa-smd-ibm-st-v2) is a Bi-encoder sentence transformer model, that is fine-tuned from nasa-smd-ibm-v0.1 encoder model. it is an updated version of nasa-smd-ibm-st with better performance (shown below). It's trained with 271 million examples along with a domain-specific dataset of…

Idle27.9K1 year ago
Python

MediFlow se trata de un modelo inicializado con xlnet-large-cased y adaptado con preguntas y especialidades para poder realizar Derivaciones Automatizadas en Servicios Hospitalarios. El dataset se puede encontrar de manera pública y se trata de MedDialog EN.

Idle61 year ago
Python

If you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.

Idle3811 year ago
Python

> [!IMPORTANT] > Better using New version of ChemLLM! > AI4Chem/ChemLLM-7B-Chat-1.5-DPO or AI4Chem/ChemLLM-7B-Chat-1.5-SFT

Idle1.1K1 year ago
Python

Chemma-2B is a continually pretrained gemma-2b model for organic molecules. It is pretrained on 40B tokens covering 110M+ molecules from PubChem as well as their chemical properties (molecular weight, synthetic accessibility score, drug-likeness etc.) and similarities (Tanimoto distance between…

Idle471 year ago
Python

## Quick Start ```Python from transformers import AutoTokenizer, AutoModel

Idle381 year ago
Python

ChemFIE-SA is a BERT-like sequence classifier for predicting synthesis accessibility given a SELFIES string of a compound, fine-tuned from gbyuvd/chemselfies-base-bertmlm on DeepSA's expanded dataset from Wang et al. 2023.

Stale132 years ago
Python

This model is a BERT-like sequence classifier for 221 human protein drug targets, fine-tuned from gbyuvd/chemselfies-base-bertmlm on a dataset derived ChemBL34 (Zdrazil et al. 2023). It predicts potential drug targets using chemical structures represented as SELFIES (Self-Referencing Embedded…

Stale192 years ago
Python

The Mistral-DNA-v1-138M-bacteria Large Language Model (LLM) is a pretrained generative DNA text model with 17.31M parameters x 8 experts = 138.5M parameters. It is derived from Mistral-7B-v0.1 model, which was simplified for DNA: the number of layers and the hidden size were reduced.

Stale162 years ago
Python

Model Card for "medllama" ---------------------------

Stale152 years ago
Python

This is a ReactionT5 pre-trained to predict the products of reactions.

Stale1162 years ago
Python

!image/png

Stale7.9K2 years ago
Python

## Model Overview AgroNT is a DNA language model trained on primarily edible plant genomes. More specifically, AgroNT uses the transformer architecture with self-attention and a masked language modeling objective to leverage highly available genotype data from 48 different plant speices to learn…

Stale4.2K2 years ago
Python

If you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.

Stale3362 years ago
Python

# Medical-Llama3-v2 Fine-Tuned Llama3 for Medical Q&A This repository provides a fine-tuned version of the powerful Llama3 8B model, specifically designed to answer medical questions in an informative way. It leverages the rich knowledge contained in the AI Medical Chatbot dataset…

Stale332 years ago
Python

This is an official model checkpoint for Asclepius-Mistral-7B-v0.3 (arxiv). This model is an enhanced version of Asclepius-7B, by replacing the base model with Mistral-7B-v0.3 and increasing the max sequence length to 8192.

Stale2462 years ago
Python

This is an official model checkpoint for Asclepius-Llama3-8B (arxiv). This model is an enhanced version of Asclepius-7B, by replacing the base model with Llama-3 and increasing the max sequence length to 8192.

Stale852 years ago
Python

If you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.

Stale4442 years ago
Python

# MMedLM 💻Github Repo 🖨️arXiv Paper

Stale3292 years ago
Python

This model is deprecated. please use the updated sentence transformer model here: https://huggingface.co/nasa-impact/nasa-smd-ibm-st-v2. Alternatively, you can also use distilled version of the model here: https://huggingface.co/nasa-impact/nasa-ibm-st.38m

Stale142 years ago
Python

# JSL-MedLlama-3-8B-v2.0

Stale5962 years ago
Python

Reference: R. Luu and M.J. Buehler, "BioinspiredLLM: Conversational Large Language Model for the Mechanics of Biological and Bio-Inspired Materials," Adv. Science, 2023, DOI: https://doi.org/10.1002/advs.202306724

Stale612 years ago
Python

Medical mT5: An Open-Source Multilingual Text-to-Text LLM for the Medical Domain

Stale382 years ago
Python

# ChemLLM-7B-Chat-1.5-DPO: LLM for Chemistry and Molecule Science ChemLLM-7B-Chat-1.5-DPO, The First Open-source Large Language Model for Chemistry and Molecule Science, Build based on InternLM-2 with ❤

Stale4182 years ago
Python

This model is a fine-tuned version of DeBERTa on the PubMED Dataset.

Stale32.6K2 years ago
Python

Using llama.cpp release b2440 for quantization.

Stale6152 years ago
Python

!image/png

Stale3752 years ago
Python

Using llama.cpp commit fa97464 for quantization.

Stale2782 years ago
Python

!image/png

Stale1152 years ago
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# Mr-Grammatology-clinical-problems-Mistral-7B-0.5 !image/png

Stale552 years ago
Python

Abstract:

Stale96K2 years ago
Python

This is a merge of pre-trained language models created using mergekit.

Stale7942 years ago
Python

Abstract:

Stale8752 years ago
Python

This is a merge of pre-trained language models created using mergekit.

Stale4212 years ago
Python

This is a merge of pre-trained language models created using mergekit.

Stale3K2 years ago
Python

SMILES2IUPAC-canonical-base was designed to accurately translate SMILES chemical names to IUPAC standards.

Stale5.1K2 years ago
Python

# TinyLlama-1.1B

Stale1192 years ago
Python

The T5 Large for Medical Text Summarization is a specialized variant of the T5 transformer model, fine-tuned for the task of summarizing medical text. This model is designed to generate concise and coherent summaries of medical documents, research papers, clinical notes, and other…

Stale2.2K2 years ago
Python

This is official model checkpoint for Asclepius-13B (arxiv). This model is the first publicly shareable clinical LLM, trained with synthetic data.

Stale582 years ago
Python
Stale4662 years ago
Python

Details coming soon

Stale2912 years ago
Python

# Meditron 70B - GGUF - Model creator: EPFL LLM Team - Original model: Meditron 70B

Stale7962 years ago
Python

A Vision Transformer (ViT) image classification model. \ Trained on 15M histology patches from PAIP and TCGA. \ Used the MoCo v3 self supervised learning method.

Stale192 years ago
Python

This model was finetuned on concatenated pairs of interacting proteins in much the same way as PepMLM. It is meant to generate interaction partners for proteins using the masked language modeling capabilities of ESM-2. The model is not well tested, so use with caution.

Stale82 years ago
Python

ProstT5 is a protein language model (pLM) which can translate between protein sequence and structure. !ProstT5 pre-training and inference

Stale7.8K2 years ago
Python

## Model Description The "Bird Species Classifier" is a state-of-the-art image classification model designed to identify various bird species from images. It uses the EfficientNet architecture and has been fine-tuned to achieve high accuracy in recognizing a wide range of bird species.

Stale1.6K2 years ago
Python