Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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373 of 6,565 resources
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Original code at https://github.com/Edoar-do/HuBERT-ECG
Original code at https://github.com/Edoar-do/HuBERT-ECG
Original code at https://github.com/Edoar-do/HuBERT-ECG
genzeonplatform/cliniguard-vitals-ner
by genzeonplatformCliniGuard Vitals NER is a transformer-based clinical Named Entity Recognition model developed by Genzeon Platforms for automated extraction of vital signs, body measurements, and physiological parameters from clinical text.
genzeonplatform/cliniguard-ner
by genzeonplatformCliniGuard NER is a clinical Named Entity Recognition model developed by Genzeon Platforms for automated detection and de-identification of Protected Health Information (PHI) and Personally Identifiable Information (PII) in clinical text.
This model card provides an overview of the intended use of the ESMC SAE models and examples of how to access them, but it does not have a specific model or model weights. To access each SAE model collection, use the links below:
This model card provides an overview of the intended use of the ESMC SAE models and examples of how to access them, but it does not have a specific model or model weights. To access each SAE model collection, use the links below:
biohub/esmc-600m-2024-12
by biohubThis set of model weights was released with the GitHub-compatible esm package format. The models here are kept for backwards compatibility, but we recommend you use the HuggingFace-compatible model weights at biohub/ESMC-6B (or biohub/ESMC-300M / biohub/ESMC-600M) instead.
biohub/ESMC-6B
by biohubESMC is a state-of-the-art protein language model that has learned the rules of protein biology from training on billions of protein sequences. ESMC provides representations of proteins enabling novel AI applications from therapeutic protein engineering to unlocking basic insights into protein…
biohub/ESMC-600M
by biohubESMC is a state-of-the-art protein language model that has learned the rules of protein biology from training on billions of protein sequences. ESMC provides representations of proteins enabling novel AI applications from therapeutic protein engineering to unlocking basic insights into protein…
biohub/ESMC-300M
by biohubESMC is a state-of-the-art protein language model that has learned the rules of protein biology from training on billions of protein sequences. ESMC provides representations of proteins enabling novel AI applications from therapeutic protein engineering to unlocking basic insights into protein…
FINAL-Bench/Darwin-218B-Delphi
by FINAL-Bench> VIDRAFT FINAL-Bench — chemistry-specialized 218B MoE, served via the DELPHI 5-Phase inference cascade.
AIRI-Institute/genatator-pipeline
by AIRI-InstituteGENATATOR-PIPELINE is a Hugging Face pipeline for ab initio gene annotation from genomic DNA. It accepts a FASTA file, finds candidate transcript intervals, assigns transcript type, predicts exon and CDS structure, and writes a GFF3 annotation file.
HealthJudge is a domain-adapted helpfulness evaluator for health-related Community Notes. It is designed to judge whether a note provides helpful context for a potentially misleading social-media post, following the Community Notes helpfulness criteria.
## Model Description ProtGPT3-112M is a single-sequence autoregressive protein language model for protein sequence generation. It is the smallest model in the ProtGPT3 family, an open-source suite of promptable and aligned protein language models ranging from 112M to 10B parameters.
ProtGPT3-10B is a single-sequence autoregressive protein language model for protein sequence generation. It is the largest model in the ProtGPT3 family, an open-source suite of promptable and aligned protein language models ranging from 112M to 10B parameters.
poolside-laguna-hackathon/protein-ligand-design
by poolside-laguna-hackathon!Protein-ligand interaction header
UCL-CSSB/PlasmidGPT
by UCL-CSSBA HuggingFace-compatible repackaging of PlasmidGPT (Shao, 2024) — a GPT-2-style decoder pretrained on 153k engineered plasmid sequences from Addgene. Loadable with standard AutoModelForCausalLM and AutoTokenizer. Used as the base for PlasmidGPT-SFT and PlasmidGPT-GRPO.
Hulu-Med: A Transparent Generalist Model towards Holistic Medical Vision-Language Understanding
Hulu-Med: A Transparent Generalist Model towards Holistic Medical Vision-Language Understanding
Hulu-Med: A Transparent Generalist Model towards Holistic Medical Vision-Language Understanding
For a convenient overview and download list, visit our model page for this model.
biohub/esmc-300m-2024-12
by biohubThis set of model weights was released with the GitHub-compatible esm package format. The models here are kept for backwards compatibility, but we recommend you use the HuggingFace-compatible model weights at biohub/ESMC-6B (or biohub/ESMC-300M / biohub/ESMC-600M) instead.
ctheodoris/Geneformer
by ctheodoris# Geneformer Geneformer is a foundational transformer model pretrained on a large-scale corpus of human single cell transcriptomes to enable context-aware predictions in settings with limited data in network biology.
ScientaLab/eva-rna
by ScientaLabwellsondahostaraguaia/consultas-medica-saude-mulher
by wellsondahostaraguaiaModelo fine-tunado com LoRA (MLX / Apple Silicon) para assistência clínica em saúde da mulher.
Manhph2211/D-BETA
by Manhph2211havocy28/VetBERT
by havocy28This is the pretrained VetBERT model from the github repo: https://github.com/havocy28/VetBERT
Hamdan003/inventmol-r1
by Hamdan003Target-Conditioned Molecular Ideation Model for Drug Discovery Research
Junhauwong/Surge-Cognition-4x8B
by JunhauwongBGI-HangzhouAI/Genos-m
by BGI-HangzhouAIGenos-m is a foundation model for human-associated microbial genomes. It is trained to model microbial DNA sequences at single-nucleotide resolution and supports ultra-long genomic contexts up to one million tokens.
Qwen3-8B-syco_med-gated-attention-FT is a plug-and-play gated attention weight released for AI safety research.
vadimbelsky/qwen3.5-medical-ft
by vadimbelskyLoRA fine-tune of Qwen3.5-9B on synthetic clinical triage Q&A pairs generated from PubMed Central open-access papers. The model is specialized for emergency-medicine decision-making: triaging patients, applying clinical decision rules, and generating protocol-grounded triage recommendations.
Gemma 4 E2B fine-tuned on 225K drug–target pairs for novel small-molecule generation.
macwiatrak/bacformer-large-masked-MAG
by macwiatrak- 2025-05-15: We identified a bug in the Bacformer Large code on HuggingFace which resulted in a significant drop in the quality of the output embeddings. This is now fixed, but if you downloaded or cached the model before this date, re-download and use the latest model revision before running…
- 2025-05-15: We identified a bug in the Bacformer Large code on HuggingFace which resulted in a significant drop in the quality of the output embeddings. This is now fixed, but if you downloaded or cached the model before this date, re-download and use the latest model revision before running…
mradermacher/zerank-2-GGUF
by mradermacherFor a convenient overview and download list, visit our model page for this model.
MIST is a family of molecular foundation models for molecular property prediction. The models were pre-trained on SMILES strings from the Enamine REAL Space dataset using the Masked Language Modeling (MLM) objective, then fine-tuned for downstream prediction tasks.
ConvergeBio/virtual-cell-patient
by ConvergeBioA patient-level disease classification model trained on single-cell RNA-seq data. Given a matrix of gene expression profiles (one row per cell), the model produces a disease-category prediction for the patient.
MedPsy-4B is a state-of-the-art, text-only medical and healthcare language model purpose-built for edge deployment. Built on top of Qwen3-4B-Thinking-2507 and post-trained with a multi-stage pipeline (supervised fine-tuning + reinforcement learning) on curated medical data, it surpasses models…
MedPsy-1.7B is a state-of-the-art, text-only medical and healthcare language model purpose-built for edge and smartphone deployment. Built on top of Qwen3-1.7B (operated in thinking mode, i.e. with enable_thinking=True) and post-trained with a multi-stage pipeline (supervised fine-tuning +…
SongKun909/Qwen2.5-7B-Battery-Expert-LoRA
by SongKun909## Introduction (简介) This model is a domain-specific expert fine-tuned from Qwen/Qwen2.5-7B-Instruct using LoRA (Low-Rank Adaptation). It is specifically designed for Fine-grained Information Extraction (IE) of technical indicator quintuples from highly complex lithium-ion battery patents.
mradermacher/Qwopus3.5-27B-v3.5-GGUF
by mradermacherFor a convenient overview and download list, visit our model page for this model.
Duchifat-2.3-Instruct is a state-of-the-art, instruction-tuned Large Language Model developed by TopAI. As the flagship of the Duchifat series, this model represents a fundamental breakthrough in how Hebrew is processed, reasoned, and generated in the LLM era.