Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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7 of 6,573 resources
Git repo for Bio::DB::HTS module on CPAN, providing Perl links into HTSlib
Cis-mQTL mapping protocol for placental methylome using TensorQTL, providing a step-by-step guide for genotype QC, imputation, and analysis with detailed scripts and commands.
CLIFinder is a Galaxy tool designed to identify potential L1 Chimeric Transcripts from RNA-seq data by analyzing paired-end reads in the human genome. It allows customization to detect transcripts initiated by different repeat elements.
NOVOPlasty - The organelle assembler and heteroplasmy caller. NOVOPlasty is a de novo assembler and heteroplasmy/variance caller for short circular genomes..
mtag is a Python-based command line tool for jointly analyzing multiple sets of GWAS summary statistics as described by Turley et. al. (2018). It can also be used as a tool to meta-analyze GWAS results.
MITObim - mitochondrial baiting and iterative mapping
GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools