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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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3 of 9,815 resources
Workflow to perform aggregate rare variant tests for sequencing studies and genetic data. Implements the variant-Set Test for Association using Annotation infoRmation (STAAR) procedure, as well as SKAT, Burden, and ACAT tests for both continuous and dichotomous traits. The STAAR method incorporates qualitative functional categories and quantitative complementary functional annotations (Li and Li et al, 2020). The workflow accounts for population structure and relatedness, and scales for large whole genome sequencing studies.
LexicMap is a nucleotide sequence alignment tool for efficiently querying gene, plasmid, viral, or long-read sequences (>100 bp) against up to millions of prokaryotic genomes.