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edfcore is a zero-dependency TypeScript library for reading EDF, EDF+, BDF, and BDF+ physiological recordings in browser and Node.js applications. It provides programmatic access to biosignal samples, channel metadata, per-channel sampling rates, physical units, annotations, and discontinuous recording timelines.

Interactive explorer for single-cell transcriptomics data enabling visualization of UMAP/t-SNE embeddings, differential expression analysis, and cross-dataset comparison through a fast web-based interface; widely adopted for exploring atlas-scale single-cell datasets and integrating with AI/ML analysis workflows (773+ stars, MIT License)

Galaxy Tool Shed repositories maintained and developed by the GalaxyP community

compareMS2 is a tool for comparing sets of (tandem) mass spectra for clustering samples, molecular phylogenetics, identification of biological species or tissues, and quality control. compareMS2 currently consumes Mascot Generic Format, or MGF, and produces output in a variety of common image and distance matrix formats.

A static web application presents an interactive knowledge graph of single-cell long-read RNA sequencing literature synthesized from seven source papers. Users navigate mind-tree, network graph, guided learning-path, and Sankey views linking platforms, protocols, methods, and software. A benchmark tab provides 34 question-answer pairs with category and difficulty filters, exportable as JSON or CSV for LLM and agent evaluation.

SMILES-Mapper is a small web app that allows students to easily visualize how SMILES & InChI strings are created together with other mol-block file formats such as .mol and .sdf files.