Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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12 of 6,573 resources
Genome mapping and spliced alignment of cDNA or amino acid sequences
A small <720Kb C++ windows utility. That allows you to load Ancestry, 23andMe, FTDNA, or Genes for Good RAW DNA files search them, merge them. covert them to Ancestry format. But also create files from peer reviewed publications to compare with you loaded data to give your genetic disposition for the condition you have entered the data for an statistical risk if OR values are included. Included with the program are example files for Type 2 Diabetes risk factors. (As I have type 2 Diabetes so I could test the results).
maeparser is a parser for Schrodinger Maestro files.
Open-source, platform-independent, community-supported software for describing and comparing microbial communities
Tandem repeat genotyping with long reads, being a modified version of HipSTR.
Scalable gVCF merging and joint variant calling for population sequencing projects
A generic C++ trie search tree library for small alphabets, allowing customizable leaf node structures and supporting approximate matching and word generation.
A suite of algorithms for matching position weight matrices (PWM) against DNA sequences. It features advanced matrix matching algorithms implemented in C++ that can be used to scan hundreds of matrices against chromosome-sized sequences in few seconds. MOODS can also process high-order PWMs with dependencies between adjacent positions and sequence variants such as SNPs, insertions and deletions.
VerityMap is a tool for mapping long reads to assemblies of extra-long tandem repeats, producing SAM files and identifying potential heterozygous sites and assembly errors through analysis of rare k-mers. It supports PacBio HiFi and ONT reads and generates interactive HTML plots for variant analysis.
A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
MailsDaddy MBOX to PST Converter is designed to move single or multiple MBOX file to Outlook PST, EML, MSG, HTML etc.