Find open-source science resources

A web application for scale-insensitive estimation of speed and distance traveled from animal tracking data.

This package combines a set of functions for analysing multisensor geolocator data such as Pressure, Activity, Magnetism, Temperature or Light. This includes functions for importing and visualising any or all of these sensor data, formatting the data for analysis (with some functions already setup for birds), deriving classifications (using cluster analysis or hidden markove models), and finally for comparing classification accuracy between different models.

Multi-Object Tracking in Heterogeneous environments (MOTHe) for animal video recordings. This repository is the backend library of our GUI based app - MOTHe-GUI. Mothe is a PYPI library to detect and track multiple animals in a heterogeneous environment. MOTHe is a python based repository and it uses Convolutional Neural Network (CNN) architecture for the object detection task. It takes a digital image as an input and reads its features to assign a category.

Functions, classes & app for simulating and estimating close-kin dispersal kernels

Musculoskeletal optimal control. OpenSim Moco solves optimal control problems with musculoskeletal models defined in OpenSim, using direct collocation. OpenSim Moco is a software toolkit to solve optimal control problems with musculoskeletal models defined in OpenSim, including those with kinematic constraints. Using the direct collocation method, Moco can solve a wide range of problems, including motion tracking, motion prediction, and parameter optimization. The design of Moco focuses on ease-of-use, customizability, and extensibility. Just like OpenSim itself, Moco has interfaces in XML/command-line, Matlab, Python, Java, and C++.

A Comprehensive Protein-coding Gene Origination Database on the Evolutionary Timescale of Life.

Animal Sex Reversal database.

A compendium of genetic regulatory effects across pig tissues.