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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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Predicts transcription factor binding sites in up to 316 vertebrate species by scoring JASPAR matrices against Ensembl promoter sequences and combining the match with seven contextual experimental datapoints, including evolutionary conservation, CAGE-defined transcription start sites, eQTLs, ChIP-seq peaks, ATAC-seq accessibility, DNase footprints and gene expression correlation, into a single score per site.