Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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5 of 9,815 resources
An open-source software for characterizing the transport of particles in biorelevant media.
GeoTox is an open-source R software package for characterizing the risk of perturbing molecular targets involved in adverse human health outcomes based on exposure to spatially-referenced stressor mixtures. It facilitates source-to-outcome continuum modeling for individual and population-level risk assessment.
The MOSAIC bioacc application is a turn-key web tool providing bioaccumulation metrics (BCF/BMF/BSAF) from a toxicokinetic (TK) model fitted to accumulation-depuration data. It is designed to fulfil the requirements of regulators when examining applications for market authorization of active substances.
The ToxPi framework provides a method for transparently integrating and visualizing data across disparate information domains and is often used to determine risk values for the data being analyzed.
ToxTempAssistant helps scientists document cell-based toxicological test methods more efficiently. Based on the ToxTemp template from OECD Guidance Document 211, the tool guides users through 77 structured questions to create clear, standardised test method descriptions. Using large language models, ToxTempAssistant extracts and organises information from uploaded documents, turning manual data entry into an expert-review process. Its goal is to reduce the documentation burden and support the wider acceptance of New Approach Methodologies.