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Provides a consistent interface for downloading, storing, and accessing immune

omicsViewer visualizes ExpressionSet (or SummarizedExperiment) in an interactive way. The

PhyloProfile is a tool for exploring complex phylogenetic profiles. Phylogenetic

protein-protein interaction (PPI) networks. GCN inference relies on the popular

BgeeCall allows to generate present/absent gene expression calls without using

SpaceTrooper performs Quality Control analysis using data driven GLM models

protein language models into the R environment. Provides unified interfaces

Leverage the existing open access TCGA data on Terra with

protein sequences. GFF files are often used to describe the features

protein-protein interactions), by including network-based regularizers. glmSparseNet uses

protein-coding genes, followed by enrichment analysis. Results can be visualized

protein domain-based approach and; iii. synteny detection using synteny

Computes Multiple Co-Inertia Analysis (MCIA), a dimensionality reduction (jDR

MAPFX is an end-to-end toolbox that pre-processes

proteins with potential clinical associations. From CNA and RNA-seq data

We present a statistical simulator, scDesign3, to generate realistic single

Protein coding genes from a list of candidates. Systematically download

protein sequences and classify them based on their modes of duplication

protein abundance compared to conventional aggregation methods. This algorithm employs

protein sequences and analyze them. Anchor pairs are detected with

protein markers at the single-cell level, producing high dimensional

A molecular informatics toolkit with an integration of bioinformatics and

The 'funOmics' package ggregates or summarizes omics data into higher

protein products). The network is scanned using SConES, which looks

protein coding genes. FGGA embodies elements of predicate logic, communication

proteins, arranged such that the probability that gene products participate

protein sequence data and classify them into families and subfamilies

magrene allows the identification and analysis of graph motifs in

protein databases based on user-submitted genomic variants, splice-junctions

Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool

DiffLogo is an easy-to-use tool to visualize motif

protein’s simultaneous impact into multiple complexes based on network

protein-protein interaction (PPI), chemical-chemical interaction (CCI), or single

proteins (Y), to infer a matrix of molecular protein dependencies

proteins. These are individual amino acids that accumulate mutations at a much

protein-coding genes, distal enhancers, and genes encoding microRNAs and lncRNAs

protein engineering is key to solving fundamental problems in synthetic

protein sequences using 'ggplot2'. Multiple sequence alignment can easily be combined

protein and gene information can be searched for using the API. Methods

proteins from multi-omics' data (MOMA) algorithm, as well as ancillary

analysis of thermal proteome profiles reveals novel drug-binding proteins.

proteins perform their functions in networks associated with other proteins

protein-RNA interaction sites, RNA modification sites (alias the epitranscriptome

protein. Note that for using the package, the user has to download

protein complex assembly and (differential) protein-protein interactions across conditions

protein. Thus, to understand the molecular mechanisms underlying genetic traits

proteins form a major fraction of the druggable proteome and can be used

protein, ii) isolate individual synaptonemal complexes and measure their physical

protein interactions from 2D thermal profiles (DLPTP), Performs an FDR-controlled