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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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5 of 9,815 resources
gisttools is a Python package and set of Jupyter notebooks designed to compute the free energy of solvation of molecules on a 3D grid using Grid Inhomogeneous Solvation Theory (GIST). It allows for detailed analysis of solvation energetics (energy and entropy contributions) around proteins and small molecules.
Deep Fingerprint Learn (DFPL) is an aI for predicting chemical-effect associations at the universe level. Link molecular structures of chemicals (in form of topological fingerprints) with multiple targets.
The Software Tool for Peptide Specificity Analysis (PeSA) is an open-source software designed as a tool to use in the analysis of peptide arrays, permutation arrays and OPALs. The analysis can be used to generate motifs to share the results as a position-specific scoring matrix (PSSM).
Web server for predicting SAM binding residues of a protein from its amino acid sequence.
BtToxin_Digger is a comprehensive and high-throughput pipeline for mining toxin protein genes from Bacillus thuringiensis. BtToxin_Digger is a Bt toxin mining tool which integrated BLAST, HMM (Hidden Markov Model) and SVM (Supporting Vector Machine) prediction modules.