Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

27 of 6,223 resources

A library and command-line tool for building and analyzing complex homogeneous microkinetic models from quantum chemistry calculations, with support for quasi-harmonic thermochemistry, quantum tunnelling corrections, molecular symmetries and more.

Active644 days ago
Python
MIT

A quantum chemistry package written in Python.

Active774 days ago
Python
Apache-2.0

A collection of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and transport processes.

Active8204 days ago
C++
NOASSERTION

Parameter/topology editor and molecular simulator with visualization capability.

Active4521 week ago
Python

High-Throughput Molecular Dynamics: Programming Environment for Molecular Discovery.

Active2741 week ago
Rich Text Format
NOASSERTION

Python Library for Automating Molecular Simulation: input preparation, job execution, file management, output processing and building data workflows.

Active912 weeks ago
Python
NOASSERTION

Open source PEM (Proton Exchange Membrane) fuel cell simulation tool.

Active2292 weeks ago
Python
MIT

A package to 'build' collections of materials properties from the output of computational materials calculations.

Active673 weeks ago
Python
NOASSERTION

A tool and library for creating quantum chemistry input files.

Active514 weeks ago
Python
BSD-3-Clause

Quantum chemisttry web platform that brings all the necessary tools to perform quantum chemistry in a user-friendly web interface.

Active761 month ago
JavaScript
GPL-3.0

A Simulation Tool for Fractured and Deformable Porous Media.

Active3101 month ago
Python
GPL-3.0

atomate2 is a library of computational materials science workflows.

Active3151 month ago
Python
NOASSERTION

Makes alchemical free energy calculations easier by leveraging the full power and flexibility of the PyData stack.

Active2411 month ago
Python
BSD-3-Clause

Interaction Fingerprints for protein-ligand complexes and more.

Active5011 month ago
Python
Apache-2.0

The "FRamewOrk for Molecular AGgregate Excitations" enables localised QM/QM' excited state calculations in a solid state environment.

Active311 month ago
Python
MIT

A library containing basis sets for use in quantum chemistry calculations. In addition, this library has functionality for manipulation of basis set data.

Active1994 months ago
Python
BSD-3-Clause

File parser/converter for QM, MD and plane-wave DFT programs.

Active1705 months ago
Python
LGPL-3.0

A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.

Idle3286 months ago
Python
MIT

A library for computational chemistry (DFT) for input file generation, data extraction, method screening and analysis.

Idle228 months ago
Python
Apache-2.0

A library for estimating thermochemical properties of molecules and adsorbates using group additivity.

Idle912 months ago
Python
MIT

General purpose tools for high-throughput catalysis.

Idle1041 year ago
Python
GPL-3.0

A module for solving and visualizing the Schrödinger equation.

Idle1.2K1 year ago
Python
BSD-3-Clause

Usage-Instructions) - A program to visualize reaction networks.

Idle261 year ago
Python
LGPL-3.0

Psi4-based reference implementations and Jupyter notebook-based tutorials for foundational quantum chemistry methods.

Stale3942 years ago
Jupyter Notebook
BSD-3-Clause

An open, extensible Python framework for GPU-accelerated alchemical free energy calculations.

Stale2023 years ago
Python
MIT

Open Drug Discovery Toolkit, a modular and comprehensive toolkit for use in cheminformatics, molecular modeling etc.

Stale4643 years ago
Python
BSD-3-Clause

A calculator incorporating various empirical pair and many-body potentials.

Stale238 years ago
Fortran
LGPL-3.0