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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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5 of 9,815 resources
SampleQC is an R package for robust multivariate, multi-celltype, multi-sample quality control for single cell RNA-seq. QC is typically done by looking at univariate measures of experimental quality for each cell (such as library size, number of features observed, mitochondrial proportion), and identifying cells that are outliers in some way (e.g. high mitochondrial proportion or small library size).
iQcell is a platform for predicting the effect of gene perturbations on developmental trajectories using single-cell RNA-seq data.
DropletQC R package which utilises a novel QC metric, the nuclear fraction, to identify droplets containing ambient RNA or damaged cells.
Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq data and proposing cancer-specific treatments.