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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

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qam is a Python library and command-line tool to compute 3D surface-distances for evaluating liver ablation/tumor completeness based on segmentation images.

Stale25 years ago
Python
GPL-3.0

This desktop application enables users to upload DICOM data along with associated clinical information to QP-Insights—the data management platform of the UPV Reference Node within EUCAIM.

AIDREAMPancreas is a medical imaging application designed to support the review, annotation, and classification of pancreatic lesions on CT. It provides automatic pancreas segmentation that can be manually adjusted by the user, as well as dedicated segmentation tools for lesion annotation. The application enables users to classify individual lesions through structured forms and to perform an overall assessment of the pancreatic condition using standardized classification workflows. The tool is intended to assist clinicians and researchers in the consistent analysis and annotation of pancreatic imaging data