Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

3 of 5,923 resources

Fast, interactive, multi-dimensional image viewer for Python, foundational platform for scientific imaging AI with a rich plugin ecosystem integrating deep learning segmentation, object tracking, and microscopy analysis workflows (2.6K+ stars)

Active2.7K2 weeks ago
Python
BSD-3-Clause

Generalist deep learning algorithm for cell and nucleus segmentation across diverse image types, with human-in-the-loop training (2.0) and one-click image restoration (3.0), 70K+ training objects (Nature Methods 2021/2022/2025)

Active2.2K2 weeks ago
Python
BSD-3-Clause

Deep learning-based object detection and segmentation for star-convex shapes, widely adopted for cell and nucleus segmentation in fluorescence and electron microscopy via a compact neural network architecture with non-maximum suppression and shape-based post-processing (Nature Methods 2020, 1.2K+ stars)

Active1.2K3 months ago
Python
BSD-3-Clause