Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

24 of 7,055 resources

PyTorch framework for training neural network interatomic potentials with the Equivariant Transformer (ET) architecture and its efficient TensorNet successor, providing equivariant message passing with linear complexity in tensor order; underpins the MACE-OFF and SPICE models and widely adopted across molecular dynamics and materials simulation workflows (Amsterdam Machine Learning Lab / De Fabritiis Group, 483+ stars, MIT License, actively maintained)

Active4846 days ago
Python
MIT

Graph deep learning library for materials science powering the M3GNet universal interatomic potential across periodic-table elements, with property prediction, structure relaxation, and crystal generation workflows built on PyTorch and DGL (576+ stars, BSD-3-Clause, actively maintained)

Active5761 week ago
Python
BSD-3-Clause

PyTorch toolkit for deep neural networks in atomistic simulations, implementing SchNet, DimeNet++, PaiNN, and GemNet for molecular dynamics and quantum chemistry (900+ stars)

Active9411 week ago
Python
NOASSERTION

Meta's comprehensive ML ecosystem for materials/chemistry with 118M+ DFT calculations, EquiformerV2 models achieving top Matbench Discovery performance

Active2.3K3 weeks ago
Python
NOASSERTION

Universal pretrained neural network potential with charge and magnetic moment awareness, trained on 1.5M+ Materials Project inorganic structures for charge-informed molecular dynamics and phase diagram prediction (Berkeley, Nature Machine Intelligence 2023 Cover)

Active4123 weeks ago
Python
NOASSERTION

Developer toolkit for accelerating training and inference for AI in chemistry and material science, providing optimized GPU-accelerated workflows for molecular and materials machine learning (NVIDIA, 2026)

Active1611 month ago
Python
Apache-2.0

Universal machine learning interatomic potential for atomistic simulation of materials, molecules, and biomolecules across the periodic table, with open-source pretrained models and inference tools (Orbital Materials, 2024-2025)

Active6161 month ago
Python
Apache-2.0

AI-driven desktop workbench for computational materials science with an interactive 3D structure editor, natural-language CatBot assistant, visual DAG workflow engine, remote-cluster access, and HPC job submission for VASP, ORCA, CP2K, Quantum ESPRESSO, GPAW, DFTB+, SIESTA, and LAMMPS (172+ stars, AGPL-3.0, 2026)

Active1961 month ago
TypeScript
AGPL-3.0

Python Materials Genomics: robust materials analysis library defining classes for structures and molecules with support for many electronic structure codes; foundational toolkit powering the Materials Project (Berkeley Lab, 1.8K+ stars)

Active2K1 month ago
Python
NOASSERTION

Curated list of atomistic ML projects for materials science

Active7181 month ago
CC-BY-SA-4.0

Diffusion-based generative model for inorganic materials design, steering generation by chemistry, symmetry, bulk modulus, band gap, or magnetic properties, 2× more likely to produce stable novel structures than prior methods, experimentally validated with synthesized TaCr₂O₆ (Microsoft, Nature 2025)

Active1.8K1 month ago
Python
MIT

Machine learning interatomic potentials

Active1.3K1 month ago
Python
NOASSERTION

Neural network-based exchange-correlation functional for density functional theory (DFT) that surpasses state-of-the-art hybrid functionals in accuracy for main-group thermochemistry, kinetics, and non-covalent interactions at semi-local DFT cost; includes PySCF/GPU4PySCF/ASE bindings and C++/Fortran integrations (248+ stars, MIT License)

Active2481 month ago
Python
MIT

Deep learning atomistic model across elements, temperatures, and pressures

Active5991 month ago
Python
MIT

E(3)-equivariant neural network interatomic potentials achieving DFT accuracy with up to 1000× less training data than invariant models, foundational architecture behind MACE and Allegro (Harvard, MIT, Nature Communications 2022)

Active9541 month ago
Python
MIT

Graph neural network interatomic potential package supporting efficient multi-GPU parallel molecular dynamics simulations, enabling large-scale atomistic modeling with machine learning potentials (MDIL-SNU, MIT License)

Active2742 months ago
Python
MIT

Family of large language models for materials research via continued pretraining of LLaMA-2/3 on ~30B materials science tokens, outperforming commercial LLMs on materials science tasks while identifying "adaptation rigidity" in overtrained models; includes MatNLP benchmark and CIF crystal generation capabilities (IIT Delhi M3RG, MIT License)

Active663 months ago
Jupyter Notebook
MIT

DeepMind's graph neural network for materials exploration, discovering 2.2M new crystal structures (380K most stable) equivalent to 800 years of traditional research, with 520K+ materials dataset open-sourced (Nature 2023)

Active1.2K3 months ago
Jupyter Notebook
Apache-2.0

Highly scalable equivariant deep learning interatomic potentials enabling million-atom molecular dynamics simulations with ab initio accuracy, building on E(3)-equivariant architectures for large-scale atomistic modeling (mir-group, MIT License, 480+ stars)

Active4984 months ago
Python
MIT

Unified latent diffusion transformer that jointly generates periodic crystals and non-periodic molecules, scaling to 500M parameters with SOTA results on QM9, MP20, and GEOM-DRUGS (Meta FAIR, ICML 2025, 310+ stars)

Active3185 months ago
Python
NOASSERTION

Equivariant foundation models for materials "on a budget", releasing pre-trained universal interatomic potentials (nequix-mp-1 on MPtrj, nequix-omat-1 on OMat24, nequix-oam-1 combining OMat24, sAlex, and MPtrj frontier datasets) with phonon fine-tuning (PFT) for accurate lattice dynamics and analytical Hessians; pip-installable with ASE calculator and JAX/PyTorch backends with OpenEquivariance kernels (Atomic Architects, 76+ stars, MIT License, 2025-2026)

Idle766 months ago
Python
MIT

NIST's open-source platform for data-driven atomistic materials design, integrating DFT datasets (JARVIS-DFT), machine learning property prediction (JARVIS-ML), and a comprehensive leaderboard for benchmarking materials AI methods across the periodic table (384+ stars)

Idle4011 year ago
Python
NOASSERTION

Materials informatics benchmark

Stale2182 years ago
Python
MIT

Crystal property prediction

Stale8935 years ago
Python
MIT