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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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4 of 9,831 resources
EigenDel is a tool for detecting genomic deletions from high-throughput sequence data with unsupervised learning.
PecanPy: A parallelized, efficient, and accelerated node2vec in Python. Learning low-dimensional representations (embeddings) of nodes in large graphs is key to applying machine learning on massive biological networks. Node2vec is the most widely used method for node embedding. PecanPy is a fast, parallelized, memory efficient, and cache optimized Python implementation of node2vec. It uses cache-optimized compact graph data structures and precomputing/parallelization to result in fast, high-quality node embeddings for biological networks of all sizes and densities.
Inductive Inference of Gene Regulatory Network Using Supervised and Semi-supervised Graph Neural Networks. GRGNN -- Gene Regulatory Graph Neural Network. Gene regulatory graph neural network (GRGNN): an end-to-end approach to reconstruct GRNs from scratch utilizing the gene expression data, in both a supervised and a semi-supervised framework.
BWA-MEME is a practical and efficient seeding algorithm based on a suffix array search algorithm that solves the challenges in utilizing learned indices for SMEM search which is extensively used in the seeding phase