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Uses platform-specific implemenations of the GatingML2.0 standard to exchange gated cytometry data with other software platforms.

phyloseq provides a set of classes and tools to facilitate the import, storage, analysis, and graphical display of microbiome census data.

This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.

Provides HDF5 storage based methods and functions for manipulation of flow cytometry data.

This package is designed to facilitate comparison of automated gating methods against manual gating done in flowJo. This package allows you to import basic flowJo workspaces into BioConductor and replicate the gating from flowJo using the flowCore functionality. Gating hierarchies, groups of samples, compensation, and transformation are performed so that the output matches the flowJo analysis.

This package provides the core data structure and API to represent and interact with the gated cytometry data.

This R package provides an R Shiny application that enables the user to generate, manage, and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics. Create cancer studies and edit its metadata. Upload mutation data of a patient that will be concatenated to the data_mutation_extended.txt file of the study. Create and edit clinical patient data, sample data, and timeline data. Create custom timeline tracks for patients.