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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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An ImageJ/FIJI macro to identify, count, and measure synaptic puncta from fluorescent images.
A user-friendly tool for cloud-based whole slide image segmentation. Histo-cloud (HistomicsTK-deeplab) is a modified version of HistomicsTK by Brendon Lutnick. HistomicsTK is a Python package for the analysis of digital pathology images. It can function as a stand-alone library, or as a Digital Slide Archive plugin that allows users to invoke image analysis jobs through HistomicsUI. The functionality offered by HistomicsTK can be extended using slicer cli web which allows developers to integrate their image analysis algorithms into DSA for dissemination through HistomicsUI.