Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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11 of 9,831 resources
Analysis of conditional colocalization relationships and hierarchies from three-color microscopy images.
a computational toolbox to study the spatiotemporal dynamics of centrosomes, nuclear envelope and cellular membrane.
Analyzing engineered point spread functions using phasor-based single-molecule localization microscopy.
An Inter-disciplinary Platform for Visual Interpretation and Labeling of ICESat-2 Geolocated Photon Data. ATLAS Photon Labeler. Contribute to Oht0nger/PhoLabeler development by creating an account on GitHub.
ChipSeg is an automatic tool to segment bacteria and mammalian cells cultured in microfluidic devices. ChipSeg is a computational tool to segment bacterial and mammalian cells cultured in microfluidic devices and imaged by time-lapse microscopy.
CaPTure allows for rapid assessment of neuronal activity in cultured cells at cellular resolution, rendering it amenable to high-throughput screening and phenotypic discovery. The platform can be applied to both human- and rodent-derived neurons and is compatible with many imaging systems.
An automated approach to spectral unmixing of fluorescent biological images.
GelBox is an open-source software designed to improve rigor and reproducibility in gel and immunoblot analysis. It combines image adjustments, background correction, band-fitting, and metadata association in a single application.
EZcalcium is a flexible, user-friendly toolbox for analysis of calcium imaging data, controlled by a set of intuitive graphical user interfaces (GUI) based on MATLAB.
a MATLAB toolbox for 4D traction force microscopy. PIV(Particle Image Velocimetry), Traction force microscopy, Template matching (OpenCV), Export movie files using ffmpeg, Align slices in stack and autofocus plugins for imageJ.