Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

13 of 7,161 resources

SOTA multimodal document parsing with 1.2B parameters outperforming GPT-4o, converts PDFs to LLM-ready Markdown/JSON

Active81.9K1 week ago
Python
NOASSERTION

Open-source PDF parser for AI-ready data, converting PDFs into Markdown/JSON/HTML/Tagged PDF with layout analysis and reading-order detection; ranks #1 overall on extraction benchmarks with deterministic bounding boxes and hybrid AI mode (26K+ stars, Apache 2.0)

Active29.5K2 weeks ago
Java
Apache-2.0

Machine learning software for extracting structured metadata from scholarly documents

Active5.2K3 weeks ago
Java
Apache-2.0

Production-grade ETL for transforming complex documents into structured formats, with open-source API

Active15.5K3 weeks ago
HTML
Apache-2.0

Advanced OCR with PP-StructureV3 document parsing, 13% accuracy improvement, supports 80+ languages

Active91.6K1 month ago
Python
Apache-2.0

High-accuracy PDF→Markdown/JSON/HTML conversion, specialized for tables/formulas/code blocks with benchmark scripts

Active40K1 month ago
Python
Apache-2.0

State-of-the-art OCR model converting images and PDFs into structured HTML/Markdown/JSON with full layout preservation, excelling at complex tables, handwritten notes, mathematical equations, forms, and 90+ languages; tops external olmOCR benchmarks and ships a pip-installable `chandra-ocr` package with HuggingFace local and vLLM server inference modes (datalab.to, the team behind Marker, 12.5K+ stars, Apache 2.0 code / OpenRAIL-M model license)

Active12.5K4 months ago
Python
Apache-2.0

Diffusion-based document OCR framework replacing autoregressive decoding with block-level parallel diffusion decoding, enabling high-accuracy text recognition in scientific PDFs (613+ stars, MIT License)

Active6194 months ago
Python
MIT

Toolkit for linearizing academic PDFs into LLM-ready text with high accuracy and structure preservation, optimized for scientific literature extraction

Idle19.5K7 months ago
Python
Apache-2.0

Neural optical understanding for academic documents, transforms scientific PDFs to Markdown with mathematical formula support

Idle10.1K1 year ago
Python
MIT

Comprehensive toolkit for high-quality PDF content extraction with layout detection, formula recognition, and OCR

Idle10K1 year ago
Python
AGPL-3.0

Parse scientific papers to structured fields (title/author/sections/references)

Stale7062 years ago
Java
Apache-2.0

Large-scale PDF/LaTeX/JATS parsing to standardized JSON for millions of papers

Stale4772 years ago
Python
Apache-2.0