Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

8 of 6,569 resources

Open-source PDF parser for AI-ready data, converting PDFs into Markdown/JSON/HTML/Tagged PDF with layout analysis and reading-order detection; ranks #1 overall on extraction benchmarks with deterministic bounding boxes and hybrid AI mode (26K+ stars, Apache 2.0)

Active28.6K6 days ago
Java
Apache-2.0

Machine learning software for extracting structured metadata from scholarly documents

Active5.1K2 weeks ago
Java
Apache-2.0

High-accuracy PDF→Markdown/JSON/HTML conversion, specialized for tables/formulas/code blocks with benchmark scripts

Active38.5K2 weeks ago
Python
Apache-2.0

Production-grade ETL for transforming complex documents into structured formats, with open-source API

Active15.3K2 weeks ago
HTML
Apache-2.0

Advanced OCR with PP-StructureV3 document parsing, 13% accuracy improvement, supports 80+ languages

Active85.8K1 month ago
Python
Apache-2.0

Toolkit for linearizing academic PDFs into LLM-ready text with high accuracy and structure preservation, optimized for scientific literature extraction

Active19.2K5 months ago
Python
Apache-2.0

Parse scientific papers to structured fields (title/author/sections/references)

Stale7022 years ago
Java
Apache-2.0

Large-scale PDF/LaTeX/JATS parsing to standardized JSON for millions of papers

Stale4732 years ago
Python
Apache-2.0