Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
Filters
Health
Domain(1)
Language(1)
License(1)
Source
Type
3 of 7,064 resources
GenBio AI's software stack for the AI-Driven Digital Organism, supporting adaptation and finetuning of multiscale biological foundation models across DNA, RNA, protein, structure, and single-cell tasks with reproducible CLIs and pretrained model zoo (2025)
Machine learning model predicting cellular perturbation response across diverse contexts with State Transition (ST) and State Embedding (SE) variants, featuring CLI tooling, PyPI distribution, and Virtual Cell Challenge integration (575+ stars)
Hybrid deep learning and alignment-based tool for identifying viruses, plasmids, and other mobile genetic elements in isolates, metagenomes, and metatranscriptomes, combining neural-network gene-content classifiers with nucleotide-sequence signatures; also performs viral taxonomic assignment, provirus detection in host genomes, and functional annotation, with precomputed databases of 200K+ viral and 1M+ plasmid genomes and web apps on Galaxy and NMDC EDGE (Berkeley Lab & DOE Joint Genome Institute, 334+ stars, actively maintained)