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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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Fits second-order autoregressive AR(2) models to gene expression time series and reports the eigenvalue modulus |lambda|, a single statistic quantifying temporal persistence: how strongly a gene's recent past constrains its next value. Ranks genes into a clock/target/background hierarchy and reports correlation length, half-life and root type (real or complex) per gene.
It is a web-application for visual and interactive gene expression analysis. Phantasus is based on Morpheus – a web-based software for heatmap visualisation and analysis, which was integrated with an R environment via OpenCPU API. Aside from basic visualization and filtering methods, R-based methods such as k-means clustering, principal component analysis or differential expression analysis with limma package are supported.
This package provides panels summarising data points in hexagonal bins for `iSEE`. It is part of `iSEEu`, the iSEE universe of panels that extend the `iSEE` package.