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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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Sequence similarity in 3D for comparison of protein families. SS3D is a bioinformatics tool for combining sequence and structure alignment data, evaluating the Sequence Similarity in 3D space between two proteins. Such comparisons are useful for a plethora of purposes such as determination of conserved positions, and explaining different functionalities of proteins that evolved from a common ancestor.
DPCfam is a method for unsupervised protein family classification.