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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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InterLabelGO+ is a hybrid protein function prediction tool that integrates deep learning and alignment-based methods, incorporating a novel loss function to address label dependency and imbalance. It achieved a strong performance in the CAFA5 challenge and is freely available on GitHub.
Mantis is a homology-based protein function annotation tool that integrates multiple reference data sources. It uses multiple high-quality data sources as a reference, however custom reference data sources can also be added. Mantis does not use a pre-built database, instead, it dynamically integrates the multiple sources into a consensus-driven output. Mantis is extensively customizable and is available on Linux.