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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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PROMIS is a tumor-only, reference-free pipeline designed to detect microsatellite instability (MSI) by modeling intrasample variability in tumor sequencing data. It calculates a continuous MSI score to classify tumor samples.
XPCLRS is a fast, rust-implemented tool designed to detect hard selective sweeps and genomic regions under selective pressure using the Cross-population composite likelihood ratio (XP-CLR) method.
MucOneUp is a specialized simulation framework designed for generating MUC1 Variable Number Tandem Repeat (VNTR) reference sequences. It simulates targeted variants and generates platform-specific sequencing reads (Illumina, Nanopore, PacBio) for systematic benchmarking of variant detection tools.
PopGenHelpR is an R Package designed for population genomics, facilitating analyses of genetic diversity, differentiation, and genetic ancestry. It streamlines complex calculations and generates visualization-ready figures from SNP data.