Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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6 of 7,742 resources
gbdraw is a web application that generates circular and linear genome diagrams for microbes and organelles, providing both a GUI and command-line utility for visualizing genomic annotations.
CellTarget is an algorithm that uses convex optimization to infer unknown cellular objectives from experimental flux data. It combines Flux Balance Analysis (FBA) with an error-minimization module to accurately predict metabolic objectives in complex systems like mammalian cells.
scellop is a Python package and interactive web application for visualizing cell population distributions in single-cell biological data. It provides a scalable redesign for visualizing cell types across multiple samples or conditions.
SKOOTS is a general-purpose, novel 3D segmentation framework designed for efficiently segmenting large, densely packed, morphologically complex objects like mitochondria in high-resolution electron microscopy datasets.
5PSeq Explorer is a web-based platform for the systematic, interactive analysis of co-translational mRNA decay and ribosome dynamics using 5'P-tagged mRNA decay intermediates (Degradome sequencing/5PSeq).
An application designed to predict the subcellular localization of protein sequences specifically within prokaryotic cells, utilizing a dual-branch deep learning architecture and protein language model embeddings.