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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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BarcodeBERT is a specialized family of transformer models designed for high-throughput taxonomic identification of DNA barcodes in biodiversity analyses. It outperforms general machine learning methods and BLAST by providing rapid and accurate species-level classification.
mrangr is an R package that provides a mechanistic, forward simulator for generating synthetic, spatially explicit metacommunity data. It allows researchers to test theoretical ecological models driven by demography, dispersal, and interactions.