Find open-source science resources

Cross-domain directory aggregating tools, AI models, datasets, and research resources from bio.tools, Bioconductor, HuggingFace, curated GitHub awesome-lists, and more.

22 of 5,684 resources

Automated and rigorous experiments using AI agents for scientific discovery

3608 months ago
Python
Apache-2.0

First system to make novel, verifiable scientific discoveries by pairing LLMs with evolutionary search, solving open problems in combinatorics (cap set problem) and discovering faster matrix multiplication algorithms

1.1K2 years ago
Jupyter Notebook
Apache-2.0

Robust, lightweight infrastructure for multi-agent autonomous self-evolution, built for autoresearch; agents run in isolated git worktrees, share knowledge through a common state directory, and are scored by a grader daemon; natively integrated with Claude Code, Codex, Cursor Agent, OpenCode, and Kiro (672+ stars, Apache 2.0)

Evolvable and privacy-preserving multi-agent framework automating, scaling, and accelerating data sciences with a particular focus on end-to-end single-cell biology analyses; features agentic code evolution, multi-agent team orchestration, distributed architecture, and a community marketplace with 1,000+ curated agents and skills (428+ stars)

Self-evolving AI scientist with 6 specialized sub-agents (plan/research/code/debug/analyze/write) and persistent memory, #1 on DeepResearch Bench II and AstaBench, supporting multi-provider LLMs and multi-channel deployment (Apache 2.0, 2026)

Universal scientific research intelligence covering 50+ disciplines, repositioning LLMs as cross-disciplinary generators with human experts as verifiers; 30B model outperforms Claude Opus and GPT on 5 research benchmarks

Andrej Karpathy's autonomous LLM research framework: AI agent runs overnight experiments on a real training setup, auto-editing code→5min training→evaluation in a loop, ~100 experiments per night on a single GPU

Automated hypothesis testing with agentic sequential falsifications

Language agent gymnasium for challenging scientific tasks including DNA manipulation, literature search, and protein engineering

FutureHouse's end-to-end scientific discovery multi-agent system orchestrating literature search (Crow/Falcon) and data analysis (Finch) agents, first AI-generated drug discovery identifying ripasudil as novel dry AMD therapeutic (2025)

Skill operating layer for biomedical AI agents with 211 production-ready SKILL.md files across 7 domains (biology, pharmacology, medicine, data science, literature search), enabling modular dry-lab reasoning and protocol composition for Stanford LabOS-compatible agents

Democratizing AI scientists by transforming any LLM into research systems with 600+ scientific tools (Harvard MIMS)

First fully customizable open-source multiagent framework automating complete research lifecycle from idea conception to LaTeX papers with dynamic workflows

Closed-loop multi-agent system from hypothesis to verification across 12 scientific tasks, #1 on MLE-Bench (36.44%)

LLM-driven machine learning engineering agent using agentic tree search to autonomously draft, debug and benchmark ML code; wins 4× more medals than the best linear agent on OpenAI's MLE-Bench (75 Kaggle competitions) (1.3K+ stars, MIT License)

Autonomous pipeline from literature review→hypothesis→algorithm implementation→publication-level writing with Scientist-Bench evaluation

Fully autonomous research from idea to paper with multi-agent debate, citation verification, and OpenClaw integration (11K+ stars, 2026)

Autonomous algorithm discovery combining evolutionary search with peer-review reward models, achieving best-known performance on circle packing problems

Extended autonomy AI scientist with 200 parallel agent rollouts, 42K lines of code execution, 1.5K papers analyzed per run, achieving 79.4% accuracy and 7 scientific discoveries (Edison Scientific)

First system progressively surpassing human SOTA on frontier AI tasks (183.7%, 1.9%, 7.9% improvements), month-long autonomous discovery with 20,000+ GPU hours

AI-human collaborative research platform where a human researcher works with a team of LLM agents via team and individual meetings to perform scientific research; demonstrated by designing new SARS-CoV-2 nanobodies with wet-lab validation

Open-source implementation of AlphaEvolve's evolutionary coding agent paradigm, enabling LLMs to autonomously discover and optimize algorithms through iterative evolution, matching the approach behind DeepMind's breakthrough matrix multiplication discovery (6.2K+ stars, 2025)